miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22907 3' -56.9 NC_005137.2 + 66472 0.66 0.840287
Target:  5'- cGCACGuuGGUC-AACGuuGcCGGUGCGc -3'
miRNA:   3'- cCGUGU--UCGGuUUGCggCaGCCGCGC- -5'
22907 3' -56.9 NC_005137.2 + 54655 0.66 0.832059
Target:  5'- cGGCGCAAuaaUAAACaGUCGcUCGGUGCGc -3'
miRNA:   3'- -CCGUGUUcg-GUUUG-CGGC-AGCCGCGC- -5'
22907 3' -56.9 NC_005137.2 + 35553 0.66 0.832059
Target:  5'- cGGCGCuuGUCAAgacACGCacCGcCGGCGCc -3'
miRNA:   3'- -CCGUGuuCGGUU---UGCG--GCaGCCGCGc -5'
22907 3' -56.9 NC_005137.2 + 96300 0.66 0.832059
Target:  5'- uGCAUucGCCGAcACGCCGgc-GCGCa -3'
miRNA:   3'- cCGUGuuCGGUU-UGCGGCagcCGCGc -5'
22907 3' -56.9 NC_005137.2 + 112437 0.66 0.832059
Target:  5'- cGUugGAGUCG---GCCGUUGGaCGCGg -3'
miRNA:   3'- cCGugUUCGGUuugCGGCAGCC-GCGC- -5'
22907 3' -56.9 NC_005137.2 + 2002 0.67 0.82365
Target:  5'- uGCAC-AGCuCGugcACGCUG-CGGCGCa -3'
miRNA:   3'- cCGUGuUCG-GUu--UGCGGCaGCCGCGc -5'
22907 3' -56.9 NC_005137.2 + 24288 0.67 0.82365
Target:  5'- gGGCGCAA-UCAAACGgCGgcguuugCGGCuGCGg -3'
miRNA:   3'- -CCGUGUUcGGUUUGCgGCa------GCCG-CGC- -5'
22907 3' -56.9 NC_005137.2 + 104781 0.67 0.82365
Target:  5'- -cCACGAGguUCGGugGCCcaGUCGGCGUGc -3'
miRNA:   3'- ccGUGUUC--GGUUugCGG--CAGCCGCGC- -5'
22907 3' -56.9 NC_005137.2 + 51861 0.67 0.82365
Target:  5'- uGUGCAcGCCuuuuACGCC--CGGCGCGa -3'
miRNA:   3'- cCGUGUuCGGuu--UGCGGcaGCCGCGC- -5'
22907 3' -56.9 NC_005137.2 + 22349 0.67 0.815068
Target:  5'- uGGCgacACAAGCaauGggUGCaCGUCGGCagGCGa -3'
miRNA:   3'- -CCG---UGUUCGg--UuuGCG-GCAGCCG--CGC- -5'
22907 3' -56.9 NC_005137.2 + 32179 0.67 0.815068
Target:  5'- --uGCAAcGCgaaaaAAACGCgGUCGGCGCa -3'
miRNA:   3'- ccgUGUU-CGg----UUUGCGgCAGCCGCGc -5'
22907 3' -56.9 NC_005137.2 + 89839 0.67 0.815068
Target:  5'- aGGCACGccuaCCAcacCGCCGUCuGCGCc -3'
miRNA:   3'- -CCGUGUuc--GGUuu-GCGGCAGcCGCGc -5'
22907 3' -56.9 NC_005137.2 + 98031 0.67 0.8142
Target:  5'- cGCGCAcuuGGUC-AGCGCCGgguggcagcacauUUGGCGCa -3'
miRNA:   3'- cCGUGU---UCGGuUUGCGGC-------------AGCCGCGc -5'
22907 3' -56.9 NC_005137.2 + 12952 0.67 0.806319
Target:  5'- aGGUGCGguuuguGGCCAAgaaauGCGCaCGUgGGCGUu -3'
miRNA:   3'- -CCGUGU------UCGGUU-----UGCG-GCAgCCGCGc -5'
22907 3' -56.9 NC_005137.2 + 97006 0.67 0.806319
Target:  5'- cGGCACGGuGCUAAGCGUgcaaUCGGUGUa -3'
miRNA:   3'- -CCGUGUU-CGGUUUGCGgc--AGCCGCGc -5'
22907 3' -56.9 NC_005137.2 + 75054 0.67 0.788361
Target:  5'- cGC-CAAGCCAAcGCGCgGUguucaGGCGCc -3'
miRNA:   3'- cCGuGUUCGGUU-UGCGgCAg----CCGCGc -5'
22907 3' -56.9 NC_005137.2 + 1582 0.67 0.788361
Target:  5'- uGCcuuGGCCAaauuuaccGAC-CCGUCGGCGCa -3'
miRNA:   3'- cCGuguUCGGU--------UUGcGGCAGCCGCGc -5'
22907 3' -56.9 NC_005137.2 + 122524 0.68 0.779166
Target:  5'- cGUGCAAGCCugcaucgggcACGUUaUCGGCGCGu -3'
miRNA:   3'- cCGUGUUCGGuu--------UGCGGcAGCCGCGC- -5'
22907 3' -56.9 NC_005137.2 + 123527 0.68 0.779166
Target:  5'- gGGCACAAGCU---UGCgGUgGGCGg- -3'
miRNA:   3'- -CCGUGUUCGGuuuGCGgCAgCCGCgc -5'
22907 3' -56.9 NC_005137.2 + 95525 0.68 0.769841
Target:  5'- gGGCACGcGCaAAAUGCCGUUGaGCGa- -3'
miRNA:   3'- -CCGUGUuCGgUUUGCGGCAGC-CGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.