miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22907 3' -56.9 NC_005137.2 + 32179 0.67 0.815068
Target:  5'- --uGCAAcGCgaaaaAAACGCgGUCGGCGCa -3'
miRNA:   3'- ccgUGUU-CGg----UUUGCGgCAGCCGCGc -5'
22907 3' -56.9 NC_005137.2 + 12847 0.68 0.731409
Target:  5'- cGGC-CAGGCCGua-GCC--CGGCGCa -3'
miRNA:   3'- -CCGuGUUCGGUuugCGGcaGCCGCGc -5'
22907 3' -56.9 NC_005137.2 + 38620 0.68 0.759443
Target:  5'- uGCGCAaauuuguuGGCCAccaugucguaaucGACGCUGggcaGGCGCGc -3'
miRNA:   3'- cCGUGU--------UCGGU-------------UUGCGGCag--CCGCGC- -5'
22907 3' -56.9 NC_005137.2 + 21075 0.68 0.760394
Target:  5'- -aCACAAGUUAAAgGCCGUUcaGGCGUu -3'
miRNA:   3'- ccGUGUUCGGUUUgCGGCAG--CCGCGc -5'
22907 3' -56.9 NC_005137.2 + 123048 0.68 0.760394
Target:  5'- -aCACGGGCCGccggucGAgGUCG-CGGCGCGc -3'
miRNA:   3'- ccGUGUUCGGU------UUgCGGCaGCCGCGC- -5'
22907 3' -56.9 NC_005137.2 + 48844 0.68 0.760394
Target:  5'- uGGgGCcAGCC-AACGCCGcguacUCGGUGUa -3'
miRNA:   3'- -CCgUGuUCGGuUUGCGGC-----AGCCGCGc -5'
22907 3' -56.9 NC_005137.2 + 122524 0.68 0.779166
Target:  5'- cGUGCAAGCCugcaucgggcACGUUaUCGGCGCGu -3'
miRNA:   3'- cCGUGUUCGGuu--------UGCGGcAGCCGCGC- -5'
22907 3' -56.9 NC_005137.2 + 1582 0.67 0.788361
Target:  5'- uGCcuuGGCCAaauuuaccGAC-CCGUCGGCGCa -3'
miRNA:   3'- cCGuguUCGGU--------UUGcGGCAGCCGCGc -5'
22907 3' -56.9 NC_005137.2 + 12952 0.67 0.806319
Target:  5'- aGGUGCGguuuguGGCCAAgaaauGCGCaCGUgGGCGUu -3'
miRNA:   3'- -CCGUGU------UCGGUU-----UGCG-GCAgCCGCGc -5'
22907 3' -56.9 NC_005137.2 + 72294 0.69 0.691607
Target:  5'- uGCACGuguGCCuaauuGACGCCaacgCGGCGCc -3'
miRNA:   3'- cCGUGUu--CGGu----UUGCGGca--GCCGCGc -5'
22907 3' -56.9 NC_005137.2 + 72345 0.7 0.651012
Target:  5'- uGCGCGAGCU--GCGCCGcUCcGCGUGc -3'
miRNA:   3'- cCGUGUUCGGuuUGCGGC-AGcCGCGC- -5'
22907 3' -56.9 NC_005137.2 + 43814 0.7 0.630591
Target:  5'- cGGCACGagcAGCCGcccGCGcCCGUCGaaCGCGa -3'
miRNA:   3'- -CCGUGU---UCGGUu--UGC-GGCAGCc-GCGC- -5'
22907 3' -56.9 NC_005137.2 + 75118 0.79 0.214673
Target:  5'- uGuaGCAAGUC-GGCGUCGUCGGCGCGa -3'
miRNA:   3'- -CcgUGUUCGGuUUGCGGCAGCCGCGC- -5'
22907 3' -56.9 NC_005137.2 + 57466 0.77 0.27962
Target:  5'- cGCGCAacgaGGCCAcGACGCCGUUuGCGCGu -3'
miRNA:   3'- cCGUGU----UCGGU-UUGCGGCAGcCGCGC- -5'
22907 3' -56.9 NC_005137.2 + 68428 0.76 0.336055
Target:  5'- cGCACGGGUUGAACGa-GUCGGCGCa -3'
miRNA:   3'- cCGUGUUCGGUUUGCggCAGCCGCGc -5'
22907 3' -56.9 NC_005137.2 + 43851 0.71 0.599987
Target:  5'- uGCACGuGCgAAACGCCG-CGGauCGCGa -3'
miRNA:   3'- cCGUGUuCGgUUUGCGGCaGCC--GCGC- -5'
22907 3' -56.9 NC_005137.2 + 37749 0.71 0.610175
Target:  5'- aGUACAGGUUAAaaGCGCCGuUUGuGCGCGu -3'
miRNA:   3'- cCGUGUUCGGUU--UGCGGC-AGC-CGCGC- -5'
22907 3' -56.9 NC_005137.2 + 31229 0.71 0.610175
Target:  5'- cGGCACAccAGCUugaacAugGCCGcgUCGuGCGCGc -3'
miRNA:   3'- -CCGUGU--UCGGu----UugCGGC--AGC-CGCGC- -5'
22907 3' -56.9 NC_005137.2 + 100028 0.71 0.610175
Target:  5'- uGCGCAAGCaCGcgguccGACGCgGcgcgCGGCGCGu -3'
miRNA:   3'- cCGUGUUCG-GU------UUGCGgCa---GCCGCGC- -5'
22907 3' -56.9 NC_005137.2 + 117563 0.7 0.630591
Target:  5'- uGUACcGGCaaaguGCGCCGcCGGUGCGg -3'
miRNA:   3'- cCGUGuUCGguu--UGCGGCaGCCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.