miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22908 5' -52.2 NC_005137.2 + 111928 0.69 0.90892
Target:  5'- -aGUCAAAGCUuugGCcgCCGUGGUGaGCg -3'
miRNA:   3'- ggUAGUUUCGG---CGaaGGCAUCACcCG- -5'
22908 5' -52.2 NC_005137.2 + 102756 0.66 0.974865
Target:  5'- -aAUCAAGGCaCGUgcggUgCGUGuUGGGCg -3'
miRNA:   3'- ggUAGUUUCG-GCGa---AgGCAUcACCCG- -5'
22908 5' -52.2 NC_005137.2 + 91330 0.75 0.6477
Target:  5'- gCCAaCuGAGCCGCUuguaUUCGUuuGUGGGCa -3'
miRNA:   3'- -GGUaGuUUCGGCGA----AGGCAu-CACCCG- -5'
22908 5' -52.2 NC_005137.2 + 81440 0.68 0.950891
Target:  5'- aCCuguUCAAAGCaauGC-UCCG-AGUGGcGCa -3'
miRNA:   3'- -GGu--AGUUUCGg--CGaAGGCaUCACC-CG- -5'
22908 5' -52.2 NC_005137.2 + 58991 0.67 0.96595
Target:  5'- cCCAcCAaguuguaaauGAGCCGCcugUCaaucUGGUGGGCg -3'
miRNA:   3'- -GGUaGU----------UUCGGCGa--AGgc--AUCACCCG- -5'
22908 5' -52.2 NC_005137.2 + 36486 0.67 0.958893
Target:  5'- gCCGUCAA--CCGUcacaacgauuuUUCCGUucacGGUGGGUu -3'
miRNA:   3'- -GGUAGUUucGGCG-----------AAGGCA----UCACCCG- -5'
22908 5' -52.2 NC_005137.2 + 30845 0.72 0.80805
Target:  5'- -aAUCAAAGCugacgacccggCGCgcCCGUAcGUGGGCg -3'
miRNA:   3'- ggUAGUUUCG-----------GCGaaGGCAU-CACCCG- -5'
22908 5' -52.2 NC_005137.2 + 19109 1.15 0.002458
Target:  5'- gCCAUCAAAGCCGCUUCCGUAGUGGGCa -3'
miRNA:   3'- -GGUAGUUUCGGCGAAGGCAUCACCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.