Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22909 | 3' | -55.7 | NC_005137.2 | + | 31048 | 0.68 | 0.756739 |
Target: 5'- -aGAggcGCGCGGCcgcgGCCGUUGUCCAa- -3' miRNA: 3'- aaCUaa-UGUGCCG----CGGCAGCGGGUag -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 96002 | 0.7 | 0.685909 |
Target: 5'- aUUGAaucgGCAUGcagGCCGUUGCCCGUCg -3' miRNA: 3'- -AACUaa--UGUGCcg-CGGCAGCGGGUAG- -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 41980 | 0.7 | 0.675526 |
Target: 5'- -cGAUUACAgCGGCaauaGCCaGUCGCCUAa- -3' miRNA: 3'- aaCUAAUGU-GCCG----CGG-CAGCGGGUag -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 103534 | 0.67 | 0.821926 |
Target: 5'- aUUGAcug-GCGGCGCaCGUCGCgaCGUCa -3' miRNA: 3'- -AACUaaugUGCCGCG-GCAGCGg-GUAG- -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 99336 | 0.67 | 0.830587 |
Target: 5'- -----cACGCGGCGgUGUCGUCCGc- -3' miRNA: 3'- aacuaaUGUGCCGCgGCAGCGGGUag -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 108545 | 0.67 | 0.833998 |
Target: 5'- gUGA--GCGCGGUGCagccgacggagcgcaCGUUGCCCAaaUCg -3' miRNA: 3'- aACUaaUGUGCCGCG---------------GCAGCGGGU--AG- -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 85319 | 0.67 | 0.83822 |
Target: 5'- ---uUUACAagagcauccgcguUGGCGCCGcCGCCCAc- -3' miRNA: 3'- aacuAAUGU-------------GCCGCGGCaGCGGGUag -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 65414 | 0.67 | 0.839058 |
Target: 5'- -----aACACGGagcggcacccaaUGCCGUUGCCCGUg -3' miRNA: 3'- aacuaaUGUGCC------------GCGGCAGCGGGUAg -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 6055 | 0.66 | 0.863261 |
Target: 5'- -----cAC-CGGCGCCG-CGUUCAUCg -3' miRNA: 3'- aacuaaUGuGCCGCGGCaGCGGGUAG- -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 15746 | 0.66 | 0.877584 |
Target: 5'- -aGGU--CGCGGCGCCagcGUCGCCauguguuCGUCg -3' miRNA: 3'- aaCUAauGUGCCGCGG---CAGCGG-------GUAG- -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 119951 | 0.66 | 0.8855 |
Target: 5'- -gGAUUugACGGUaacGCuCGU-GCCCAUUa -3' miRNA: 3'- aaCUAAugUGCCG---CG-GCAgCGGGUAG- -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 88339 | 0.66 | 0.8855 |
Target: 5'- -cGAUUGCGCgcuuGGCGUCG-CGCCaaaguaGUCc -3' miRNA: 3'- aaCUAAUGUG----CCGCGGCaGCGGg-----UAG- -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 18537 | 1.06 | 0.003462 |
Target: 5'- uUUGAUUACACGGCGCCGUCGCCCAUCc -3' miRNA: 3'- -AACUAAUGUGCCGCGGCAGCGGGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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