Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22909 | 3' | -55.7 | NC_005137.2 | + | 1509 | 0.67 | 0.810397 |
Target: 5'- -----cGCGCGGCGCCGacgcguuguucaauUCGgCCAUUa -3' miRNA: 3'- aacuaaUGUGCCGCGGC--------------AGCgGGUAG- -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 5376 | 0.67 | 0.839058 |
Target: 5'- -cGGUUACGCGuuaaCGCaCGUCGCCaauGUCu -3' miRNA: 3'- aaCUAAUGUGCc---GCG-GCAGCGGg--UAG- -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 6055 | 0.66 | 0.863261 |
Target: 5'- -----cAC-CGGCGCCG-CGUUCAUCg -3' miRNA: 3'- aacuaaUGuGCCGCGGCaGCGGGUAG- -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 12375 | 0.68 | 0.794893 |
Target: 5'- -----aGCACGGUGCgGUUGUCCAg- -3' miRNA: 3'- aacuaaUGUGCCGCGgCAGCGGGUag -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 15746 | 0.66 | 0.877584 |
Target: 5'- -aGGU--CGCGGCGCCagcGUCGCCauguguuCGUCg -3' miRNA: 3'- aaCUAauGUGCCGCGG---CAGCGG-------GUAG- -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 18255 | 0.7 | 0.654658 |
Target: 5'- ----gUACuGCGGCGCCG-CGUCCGUUa -3' miRNA: 3'- aacuaAUG-UGCCGCGGCaGCGGGUAG- -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 18537 | 1.06 | 0.003462 |
Target: 5'- uUUGAUUACACGGCGCCGUCGCCCAUCc -3' miRNA: 3'- -AACUAAUGUGCCGCGGCAGCGGGUAG- -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 25508 | 0.71 | 0.581474 |
Target: 5'- -----gACAUGGCGCCGUcaCGCUCGUUg -3' miRNA: 3'- aacuaaUGUGCCGCGGCA--GCGGGUAG- -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 31048 | 0.68 | 0.756739 |
Target: 5'- -aGAggcGCGCGGCcgcgGCCGUUGUCCAa- -3' miRNA: 3'- aaCUaa-UGUGCCG----CGGCAGCGGGUag -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 31179 | 0.67 | 0.821926 |
Target: 5'- gUUGuaaUAUACGGCGCaaccggcccgCGUCGCCCu-- -3' miRNA: 3'- -AACua-AUGUGCCGCG----------GCAGCGGGuag -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 35937 | 0.72 | 0.560792 |
Target: 5'- ----gUACACGGCuucuGCCGUUGCCUGUUa -3' miRNA: 3'- aacuaAUGUGCCG----CGGCAGCGGGUAG- -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 37316 | 0.67 | 0.821926 |
Target: 5'- -cGAUUGCGaucCGGCGCUGg-GCCUGUUg -3' miRNA: 3'- aaCUAAUGU---GCCGCGGCagCGGGUAG- -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 41980 | 0.7 | 0.675526 |
Target: 5'- -cGAUUACAgCGGCaauaGCCaGUCGCCUAa- -3' miRNA: 3'- aaCUAAUGU-GCCG----CGG-CAGCGGGUag -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 43811 | 0.72 | 0.5201 |
Target: 5'- -cGAcgGCACGaGCaGCCGcccgCGCCCGUCg -3' miRNA: 3'- aaCUaaUGUGC-CG-CGGCa---GCGGGUAG- -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 49624 | 0.7 | 0.675526 |
Target: 5'- -gGA--AUGCGGuCGCCGUUGCCCGg- -3' miRNA: 3'- aaCUaaUGUGCC-GCGGCAGCGGGUag -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 55424 | 0.69 | 0.716739 |
Target: 5'- -----cGCACGGCGCCGcccgCGUCCGc- -3' miRNA: 3'- aacuaaUGUGCCGCGGCa---GCGGGUag -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 63284 | 0.67 | 0.80407 |
Target: 5'- -----aACACGGUcucGCCGUCGCUCGc- -3' miRNA: 3'- aacuaaUGUGCCG---CGGCAGCGGGUag -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 65414 | 0.67 | 0.839058 |
Target: 5'- -----aACACGGagcggcacccaaUGCCGUUGCCCGUg -3' miRNA: 3'- aacuaaUGUGCC------------GCGGCAGCGGGUAg -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 75016 | 0.67 | 0.813084 |
Target: 5'- -cGA--GCGgGGUGCCGUCGgCCAc- -3' miRNA: 3'- aaCUaaUGUgCCGCGGCAGCgGGUag -5' |
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22909 | 3' | -55.7 | NC_005137.2 | + | 77198 | 0.67 | 0.8228 |
Target: 5'- cUUGAUUACuauuuugggugauuuCGGCaacUCGUCGCCCGUUu -3' miRNA: 3'- -AACUAAUGu--------------GCCGc--GGCAGCGGGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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