miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22909 5' -55.3 NC_005137.2 + 479 0.67 0.892281
Target:  5'- gCGGCGGCUG-C-CCAGCGUguUGUACa -3'
miRNA:   3'- gGUUGCCGGCuGaGGUUGCG--GCAUGa -5'
22909 5' -55.3 NC_005137.2 + 2436 0.68 0.856045
Target:  5'- gCggUGGCCGACgugCCcGCGCCcgACg -3'
miRNA:   3'- gGuuGCCGGCUGa--GGuUGCGGcaUGa -5'
22909 5' -55.3 NC_005137.2 + 7969 0.68 0.831819
Target:  5'- aCCGGCGGcCCGugUUCAugGaaaCCGUGu- -3'
miRNA:   3'- -GGUUGCC-GGCugAGGUugC---GGCAUga -5'
22909 5' -55.3 NC_005137.2 + 8941 0.66 0.917184
Target:  5'- cCCGGCcGCCGAC-CCGgacACGCCGc--- -3'
miRNA:   3'- -GGUUGcCGGCUGaGGU---UGCGGCauga -5'
22909 5' -55.3 NC_005137.2 + 11263 0.67 0.892281
Target:  5'- uCCAGCGGCgcUGACgUCCGcuacGCGCUG-ACg -3'
miRNA:   3'- -GGUUGCCG--GCUG-AGGU----UGCGGCaUGa -5'
22909 5' -55.3 NC_005137.2 + 18575 1.09 0.003449
Target:  5'- uCCAACGGCCGACUCCAACGCCGUACUu -3'
miRNA:   3'- -GGUUGCCGGCUGAGGUUGCGGCAUGA- -5'
22909 5' -55.3 NC_005137.2 + 20175 0.66 0.911313
Target:  5'- aCAGCGcGCaCGACUCUugcGCGUCGgcggGCg -3'
miRNA:   3'- gGUUGC-CG-GCUGAGGu--UGCGGCa---UGa -5'
22909 5' -55.3 NC_005137.2 + 20465 0.68 0.823369
Target:  5'- aCAuCGGCgGGCaccUCCAACGCC-UGCa -3'
miRNA:   3'- gGUuGCCGgCUG---AGGUUGCGGcAUGa -5'
22909 5' -55.3 NC_005137.2 + 24528 0.67 0.892281
Target:  5'- uUggUGGCCGuuUgCAucaagACGCCGUACUu -3'
miRNA:   3'- gGuuGCCGGCugAgGU-----UGCGGCAUGA- -5'
22909 5' -55.3 NC_005137.2 + 27411 0.75 0.479689
Target:  5'- gUAGCGGCCG-CUgCAGCGCUGUAa- -3'
miRNA:   3'- gGUUGCCGGCuGAgGUUGCGGCAUga -5'
22909 5' -55.3 NC_005137.2 + 31218 0.67 0.861441
Target:  5'- aCCAGCGGUCGcggcACaCCAgcuugaacauggccGCGUCGUGCg -3'
miRNA:   3'- -GGUUGCCGGC----UGaGGU--------------UGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 31631 0.66 0.915448
Target:  5'- gCCAACGGUCagugcacgcgcgcgGACgcgaCC-ACGCUGUGCa -3'
miRNA:   3'- -GGUUGCCGG--------------CUGa---GGuUGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 45672 0.67 0.892281
Target:  5'- aCCAACguGGgCGGCggcgCCAACGCgGaUGCUc -3'
miRNA:   3'- -GGUUG--CCgGCUGa---GGUUGCGgC-AUGA- -5'
22909 5' -55.3 NC_005137.2 + 46519 0.69 0.769293
Target:  5'- cCUcgUGGCCaGCUCCAACGCCaGUuauuuGCUg -3'
miRNA:   3'- -GGuuGCCGGcUGAGGUUGCGG-CA-----UGA- -5'
22909 5' -55.3 NC_005137.2 + 49039 0.68 0.823369
Target:  5'- cCUAGCGaCCGGCaCCGACagguaGCCGUGCg -3'
miRNA:   3'- -GGUUGCcGGCUGaGGUUG-----CGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 57874 0.72 0.649899
Target:  5'- uCCuuuguACGGgaCGACUacgaCGACGCCGUACa -3'
miRNA:   3'- -GGu----UGCCg-GCUGAg---GUUGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 59304 0.68 0.82677
Target:  5'- uCC-ACGGCCGACUCgguauuuuuacuuauUAGgGCCGgACUg -3'
miRNA:   3'- -GGuUGCCGGCUGAG---------------GUUgCGGCaUGA- -5'
22909 5' -55.3 NC_005137.2 + 61398 0.66 0.905203
Target:  5'- -uGGCGGCCGACguaagaAACGCCGc--- -3'
miRNA:   3'- ggUUGCCGGCUGagg---UUGCGGCauga -5'
22909 5' -55.3 NC_005137.2 + 62548 0.71 0.707804
Target:  5'- gCAACGGUCGACgaaCCAcugccucaugggcuGCGCCG-ACUc -3'
miRNA:   3'- gGUUGCCGGCUGa--GGU--------------UGCGGCaUGA- -5'
22909 5' -55.3 NC_005137.2 + 64961 0.66 0.933363
Target:  5'- gCCAACGuGCCGACgugCCAACuuucacguuuGCCa---- -3'
miRNA:   3'- -GGUUGC-CGGCUGa--GGUUG----------CGGcauga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.