miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22909 5' -55.3 NC_005137.2 + 75581 0.68 0.856045
Target:  5'- --cAUGGCgGACgcgggCGGCGCCGUGCg -3'
miRNA:   3'- gguUGCCGgCUGag---GUUGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 84208 0.68 0.856045
Target:  5'- -aAACGGCCGugUugugguaaaugUCAGCGCCGcaUACc -3'
miRNA:   3'- ggUUGCCGGCugA-----------GGUUGCGGC--AUGa -5'
22909 5' -55.3 NC_005137.2 + 85083 0.68 0.848164
Target:  5'- cCCAAauCGGgCGAUuugCCAguaaacACGCCGUGCa -3'
miRNA:   3'- -GGUU--GCCgGCUGa--GGU------UGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 74498 0.68 0.840086
Target:  5'- --uGCGGCCaACg-UAACGCCGUACa -3'
miRNA:   3'- gguUGCCGGcUGagGUUGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 103607 0.68 0.831819
Target:  5'- gCAGCGGCCGcuACUUUuggccgGACGgCGUGCg -3'
miRNA:   3'- gGUUGCCGGC--UGAGG------UUGCgGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 7969 0.68 0.831819
Target:  5'- aCCGGCGGcCCGugUUCAugGaaaCCGUGu- -3'
miRNA:   3'- -GGUUGCC-GGCugAGGUugC---GGCAUga -5'
22909 5' -55.3 NC_005137.2 + 59304 0.68 0.82677
Target:  5'- uCC-ACGGCCGACUCgguauuuuuacuuauUAGgGCCGgACUg -3'
miRNA:   3'- -GGuUGCCGGCUGAG---------------GUUgCGGCaUGA- -5'
22909 5' -55.3 NC_005137.2 + 20465 0.68 0.823369
Target:  5'- aCAuCGGCgGGCaccUCCAACGCC-UGCa -3'
miRNA:   3'- gGUuGCCGgCUG---AGGUUGCGGcAUGa -5'
22909 5' -55.3 NC_005137.2 + 66819 0.68 0.823369
Target:  5'- gCCAAuguCGGCUgugauguacguGugUCCGGCGCCGUuaaACg -3'
miRNA:   3'- -GGUU---GCCGG-----------CugAGGUUGCGGCA---UGa -5'
22909 5' -55.3 NC_005137.2 + 49039 0.68 0.823369
Target:  5'- cCUAGCGaCCGGCaCCGACagguaGCCGUGCg -3'
miRNA:   3'- -GGUUGCcGGCUGaGGUUG-----CGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 103774 0.68 0.823369
Target:  5'- cCCAGCGGCCuuCUUugUAAUGCUGUugUu -3'
miRNA:   3'- -GGUUGCCGGcuGAG--GUUGCGGCAugA- -5'
22909 5' -55.3 NC_005137.2 + 74723 0.69 0.787904
Target:  5'- uCCAGCGGCacuuCGcAgUCCAugGCCGUuuuguGCg -3'
miRNA:   3'- -GGUUGCCG----GC-UgAGGUugCGGCA-----UGa -5'
22909 5' -55.3 NC_005137.2 + 46519 0.69 0.769293
Target:  5'- cCUcgUGGCCaGCUCCAACGCCaGUuauuuGCUg -3'
miRNA:   3'- -GGuuGCCGGcUGAGGUUGCGG-CA-----UGA- -5'
22909 5' -55.3 NC_005137.2 + 95450 0.7 0.720778
Target:  5'- gCCGGCGGUgCGugUCUugacaAGCGCCGUGu- -3'
miRNA:   3'- -GGUUGCCG-GCugAGG-----UUGCGGCAUga -5'
22909 5' -55.3 NC_005137.2 + 62548 0.71 0.707804
Target:  5'- gCAACGGUCGACgaaCCAcugccucaugggcuGCGCCG-ACUc -3'
miRNA:   3'- gGUUGCCGGCUGa--GGU--------------UGCGGCaUGA- -5'
22909 5' -55.3 NC_005137.2 + 57874 0.72 0.649899
Target:  5'- uCCuuuguACGGgaCGACUacgaCGACGCCGUACa -3'
miRNA:   3'- -GGu----UGCCg-GCUGAg---GUUGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 86670 0.73 0.598662
Target:  5'- cCCAACaGCCGACUUgAACGCaCGUcGCc -3'
miRNA:   3'- -GGUUGcCGGCUGAGgUUGCG-GCA-UGa -5'
22909 5' -55.3 NC_005137.2 + 27411 0.75 0.479689
Target:  5'- gUAGCGGCCG-CUgCAGCGCUGUAa- -3'
miRNA:   3'- gGUUGCCGGCuGAgGUUGCGGCAUga -5'
22909 5' -55.3 NC_005137.2 + 18575 1.09 0.003449
Target:  5'- uCCAACGGCCGACUCCAACGCCGUACUu -3'
miRNA:   3'- -GGUUGCCGGCUGAGGUUGCGGCAUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.