miRNA display CGI


Results 41 - 60 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22910 3' -61.4 NC_005137.2 + 88814 0.71 0.377156
Target:  5'- cGCGCGUCGCguccCUGUCGGCggaCGCgacGCUGGCc -3'
miRNA:   3'- -UGUGCAGCG----GGCAGUCG---GCG---UGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 89354 0.7 0.40147
Target:  5'- gGCACGUCGCUCGUCgAGgaUGCAuCCaGCa -3'
miRNA:   3'- -UGUGCAGCGGGCAG-UCg-GCGU-GGcCG- -5'
22910 3' -61.4 NC_005137.2 + 92911 0.69 0.489223
Target:  5'- cCGCGUUGCCCGUgGGCuugucCGUGgCGGUc -3'
miRNA:   3'- uGUGCAGCGGGCAgUCG-----GCGUgGCCG- -5'
22910 3' -61.4 NC_005137.2 + 98098 0.67 0.565366
Target:  5'- uGCAUGUUGCgaguuUUGUCA-CCGcCGCCGGCu -3'
miRNA:   3'- -UGUGCAGCG-----GGCAGUcGGC-GUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 98341 0.69 0.480028
Target:  5'- uCAUGUCGUacgucaCCGUCAcGCUuguGCGCCGGUu -3'
miRNA:   3'- uGUGCAGCG------GGCAGU-CGG---CGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 100140 0.69 0.4985
Target:  5'- gGCACaGcUCGCCCacGUaCGGgCGCGCCGGg -3'
miRNA:   3'- -UGUG-C-AGCGGG--CA-GUCgGCGUGGCCg -5'
22910 3' -61.4 NC_005137.2 + 100948 0.66 0.644229
Target:  5'- uCACGg-GCCCGgCAGCUGUGCCuGUg -3'
miRNA:   3'- uGUGCagCGGGCaGUCGGCGUGGcCG- -5'
22910 3' -61.4 NC_005137.2 + 112209 0.66 0.624427
Target:  5'- uCugGUCGCgCG-CAGCCG-ACUuGGCg -3'
miRNA:   3'- uGugCAGCGgGCaGUCGGCgUGG-CCG- -5'
22910 3' -61.4 NC_005137.2 + 112443 0.66 0.663995
Target:  5'- ---aGUCGgCCGUUGGaCGCGgCGGCa -3'
miRNA:   3'- ugugCAGCgGGCAGUCgGCGUgGCCG- -5'
22910 3' -61.4 NC_005137.2 + 114167 0.68 0.52678
Target:  5'- aACACGUa-UCgGUUAGugaacCCGCACCGGCu -3'
miRNA:   3'- -UGUGCAgcGGgCAGUC-----GGCGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 114808 0.68 0.536342
Target:  5'- cGCACGUCGUcgUCGUCAGauGUcauaggcgGCUGGCg -3'
miRNA:   3'- -UGUGCAGCG--GGCAGUCggCG--------UGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 118042 0.66 0.663995
Target:  5'- gAUGCGUgCcaaCCCGUUuguGGCCGCGCCGcaGCg -3'
miRNA:   3'- -UGUGCA-Gc--GGGCAG---UCGGCGUGGC--CG- -5'
22910 3' -61.4 NC_005137.2 + 119740 0.66 0.634328
Target:  5'- aGCGCGUaGCggaCGUCAG-CGCGCUGGa -3'
miRNA:   3'- -UGUGCAgCGg--GCAGUCgGCGUGGCCg -5'
22910 3' -61.4 NC_005137.2 + 120779 0.69 0.470917
Target:  5'- aACGCGUacaccaGCuuGUgaCAGCCcaGCGCCGGUc -3'
miRNA:   3'- -UGUGCAg-----CGggCA--GUCGG--CGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 122501 0.66 0.623437
Target:  5'- -uGCGUCGCCgcgCGUCuuuuucacgugcaAGCCuGCAUCGGg -3'
miRNA:   3'- ugUGCAGCGG---GCAG-------------UCGG-CGUGGCCg -5'
22910 3' -61.4 NC_005137.2 + 123047 0.68 0.545964
Target:  5'- aACACGggcCGCCgGUCgaGGUCGCGgCGcGCa -3'
miRNA:   3'- -UGUGCa--GCGGgCAG--UCGGCGUgGC-CG- -5'
22910 3' -61.4 NC_005137.2 + 123174 0.69 0.452967
Target:  5'- uUAUuUUGCCUGUUuGCCGC-CCGGCa -3'
miRNA:   3'- uGUGcAGCGGGCAGuCGGCGuGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 124980 0.68 0.559525
Target:  5'- gGCGCuG-CGCUgCGUUGgaaaucgggcgggauGCCGCACCGGCg -3'
miRNA:   3'- -UGUG-CaGCGG-GCAGU---------------CGGCGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 126713 0.66 0.624427
Target:  5'- uGCACGcaCGgCC-UUAaCCGCACCGGCu -3'
miRNA:   3'- -UGUGCa-GCgGGcAGUcGGCGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 129504 0.66 0.663995
Target:  5'- aACGCGUCgGCgCCGcgCGGCggaaUGUACCGGa -3'
miRNA:   3'- -UGUGCAG-CG-GGCa-GUCG----GCGUGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.