miRNA display CGI


Results 41 - 60 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22910 3' -61.4 NC_005137.2 + 100140 0.69 0.4985
Target:  5'- gGCACaGcUCGCCCacGUaCGGgCGCGCCGGg -3'
miRNA:   3'- -UGUG-C-AGCGGG--CA-GUCgGCGUGGCCg -5'
22910 3' -61.4 NC_005137.2 + 114167 0.68 0.52678
Target:  5'- aACACGUa-UCgGUUAGugaacCCGCACCGGCu -3'
miRNA:   3'- -UGUGCAgcGGgCAGUC-----GGCGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 114808 0.68 0.536342
Target:  5'- cGCACGUCGUcgUCGUCAGauGUcauaggcgGCUGGCg -3'
miRNA:   3'- -UGUGCAGCG--GGCAGUCggCG--------UGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 123047 0.68 0.545964
Target:  5'- aACACGggcCGCCgGUCgaGGUCGCGgCGcGCa -3'
miRNA:   3'- -UGUGCa--GCGGgCAG--UCGGCGUgGC-CG- -5'
22910 3' -61.4 NC_005137.2 + 124980 0.68 0.559525
Target:  5'- gGCGCuG-CGCUgCGUUGgaaaucgggcgggauGCCGCACCGGCg -3'
miRNA:   3'- -UGUG-CaGCGG-GCAGU---------------CGGCGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 22452 0.81 0.083192
Target:  5'- gGCaACGUgCGCuCCGUCGGCUGCACCGcGCu -3'
miRNA:   3'- -UG-UGCA-GCG-GGCAGUCGGCGUGGC-CG- -5'
22910 3' -61.4 NC_005137.2 + 31203 0.67 0.594781
Target:  5'- cCGCGUCGCCCuuGUacCAGCgGUcgCGGCa -3'
miRNA:   3'- uGUGCAGCGGG--CA--GUCGgCGugGCCG- -5'
22910 3' -61.4 NC_005137.2 + 22368 0.67 0.61453
Target:  5'- uGCACGUCGgCaggCgAGCacuuuaacccuaCGCACCGGCa -3'
miRNA:   3'- -UGUGCAGCgGgcaG-UCG------------GCGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 47713 0.67 0.61453
Target:  5'- aGCGgGUCGCCCuGUUuGaCCGCGCUGuuuGCa -3'
miRNA:   3'- -UGUgCAGCGGG-CAGuC-GGCGUGGC---CG- -5'
22910 3' -61.4 NC_005137.2 + 122501 0.66 0.623437
Target:  5'- -uGCGUCGCCgcgCGUCuuuuucacgugcaAGCCuGCAUCGGg -3'
miRNA:   3'- ugUGCAGCGG---GCAG-------------UCGG-CGUGGCCg -5'
22910 3' -61.4 NC_005137.2 + 39756 0.66 0.624427
Target:  5'- uGCACGaCGUCCGUCAuauuccCCGgCACgUGGCa -3'
miRNA:   3'- -UGUGCaGCGGGCAGUc-----GGC-GUG-GCCG- -5'
22910 3' -61.4 NC_005137.2 + 67983 0.66 0.624427
Target:  5'- cGCACGUCG-UCGUUGGCCaCGCgCGaGCa -3'
miRNA:   3'- -UGUGCAGCgGGCAGUCGGcGUG-GC-CG- -5'
22910 3' -61.4 NC_005137.2 + 100948 0.66 0.644229
Target:  5'- uCACGg-GCCCGgCAGCUGUGCCuGUg -3'
miRNA:   3'- uGUGCagCGGGCaGUCGGCGUGGcCG- -5'
22910 3' -61.4 NC_005137.2 + 47019 0.66 0.644229
Target:  5'- cGCAaucUGUCGCuCCGUCAuggacGCCuGCACC-GCu -3'
miRNA:   3'- -UGU---GCAGCG-GGCAGU-----CGG-CGUGGcCG- -5'
22910 3' -61.4 NC_005137.2 + 75970 0.66 0.65412
Target:  5'- gACGCGgCGCgCGUUGGUgcacggCGCACgGGCc -3'
miRNA:   3'- -UGUGCaGCGgGCAGUCG------GCGUGgCCG- -5'
22910 3' -61.4 NC_005137.2 + 112443 0.66 0.663995
Target:  5'- ---aGUCGgCCGUUGGaCGCGgCGGCa -3'
miRNA:   3'- ugugCAGCgGGCAGUCgGCGUgGCCG- -5'
22910 3' -61.4 NC_005137.2 + 118042 0.66 0.663995
Target:  5'- gAUGCGUgCcaaCCCGUUuguGGCCGCGCCGcaGCg -3'
miRNA:   3'- -UGUGCA-Gc--GGGCAG---UCGGCGUGGC--CG- -5'
22910 3' -61.4 NC_005137.2 + 49746 0.66 0.663995
Target:  5'- gGCGCGUCGUuuGUUuGCUuuGCCaGCg -3'
miRNA:   3'- -UGUGCAGCGggCAGuCGGcgUGGcCG- -5'
22910 3' -61.4 NC_005137.2 + 67739 0.66 0.663995
Target:  5'- gACGCGUuugaauaaUGUCCGa-AGCgCGCACCGGg -3'
miRNA:   3'- -UGUGCA--------GCGGGCagUCG-GCGUGGCCg -5'
22910 3' -61.4 NC_005137.2 + 88505 0.66 0.673846
Target:  5'- -aAUGUCGCCgCG-CAGCaaGCGCCGuGUg -3'
miRNA:   3'- ugUGCAGCGG-GCaGUCGg-CGUGGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.