miRNA display CGI


Results 101 - 120 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 3' -49.8 NC_005137.2 + 17470 0.7 0.962103
Target:  5'- cGCAgg-GUGugGgGCUGGUgGugGUGCa -3'
miRNA:   3'- -CGUuaaCGCugCgCGGCUA-UugCACG- -5'
22911 3' -49.8 NC_005137.2 + 117459 0.7 0.945706
Target:  5'- aCAGUUGCGcCGCGCUauuaaaGUGACGgucgGCg -3'
miRNA:   3'- cGUUAACGCuGCGCGGc-----UAUUGCa---CG- -5'
22911 3' -49.8 NC_005137.2 + 104986 0.71 0.930738
Target:  5'- uGCAA-UGCGGCGUGU---UAAUGUGCa -3'
miRNA:   3'- -CGUUaACGCUGCGCGgcuAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 41832 0.71 0.935987
Target:  5'- cGCGuUUGUua-GCGCUGGUGAgGUGCa -3'
miRNA:   3'- -CGUuAACGcugCGCGGCUAUUgCACG- -5'
22911 3' -49.8 NC_005137.2 + 122060 0.71 0.940976
Target:  5'- -aAAUUGCGGCGUGuCCGGgucGGCG-GCc -3'
miRNA:   3'- cgUUAACGCUGCGC-GGCUa--UUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 63114 0.71 0.940976
Target:  5'- ---cUUGCGcuuCGCGCCGGUcGCG-GCu -3'
miRNA:   3'- cguuAACGCu--GCGCGGCUAuUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 100081 0.71 0.930738
Target:  5'- -----cGCGGCGCGCgGc--ACGUGCu -3'
miRNA:   3'- cguuaaCGCUGCGCGgCuauUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 130043 0.71 0.930738
Target:  5'- uGCAAgcuaaagccGCGccuuauUGCGCCGAUGACGgGCg -3'
miRNA:   3'- -CGUUaa-------CGCu-----GCGCGGCUAUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 31079 0.71 0.940976
Target:  5'- uGCG--UGCG-CGuCGCCGAUGauGCGUGg -3'
miRNA:   3'- -CGUuaACGCuGC-GCGGCUAU--UGCACg -5'
22911 3' -49.8 NC_005137.2 + 34366 0.72 0.900583
Target:  5'- gGCAAUgugucaaaggUGCGucaGCGCCGAU--UGUGCu -3'
miRNA:   3'- -CGUUA----------ACGCug-CGCGGCUAuuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 104645 0.72 0.886727
Target:  5'- cGCuggcUGCGuuuuGCGUGCCGGUAGCGUa- -3'
miRNA:   3'- -CGuua-ACGC----UGCGCGGCUAUUGCAcg -5'
22911 3' -49.8 NC_005137.2 + 71356 0.72 0.89378
Target:  5'- aGCAAUUuguacaacaGCGGCGUGCCGuugcaaaaaGUGGCGcGCu -3'
miRNA:   3'- -CGUUAA---------CGCUGCGCGGC---------UAUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 51702 0.72 0.913424
Target:  5'- gGCAccGUUGCG-CGCGUCGGaagcgcauguACGUGCc -3'
miRNA:   3'- -CGU--UAACGCuGCGCGGCUau--------UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 56315 0.72 0.900583
Target:  5'- -----aGCGACGCGCaaauuaAACGUGCa -3'
miRNA:   3'- cguuaaCGCUGCGCGgcua--UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 96421 0.72 0.89378
Target:  5'- cGCGcg-GCGACGCGCCcgccGCGUuGCg -3'
miRNA:   3'- -CGUuaaCGCUGCGCGGcuauUGCA-CG- -5'
22911 3' -49.8 NC_005137.2 + 18306 0.72 0.900583
Target:  5'- gGCGug-GaCGACGUGCCcgcguuUAACGUGCg -3'
miRNA:   3'- -CGUuaaC-GCUGCGCGGcu----AUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 34591 0.72 0.900583
Target:  5'- gGCGGgcGCGucgcCGCGCgGGUAGCGgucgGCg -3'
miRNA:   3'- -CGUUaaCGCu---GCGCGgCUAUUGCa---CG- -5'
22911 3' -49.8 NC_005137.2 + 81267 0.72 0.886727
Target:  5'- aGCAAacaaaCGACGCGCCGAUGAa--GCg -3'
miRNA:   3'- -CGUUaac--GCUGCGCGGCUAUUgcaCG- -5'
22911 3' -49.8 NC_005137.2 + 72338 0.73 0.856109
Target:  5'- cGCgAAUUGCGcgaGCuGCGCCGcuccGCGUGCa -3'
miRNA:   3'- -CG-UUAACGC---UG-CGCGGCuau-UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 4232 0.73 0.879427
Target:  5'- uGCAAUUGCGuCG-GUCGGcgacACGUGCa -3'
miRNA:   3'- -CGUUAACGCuGCgCGGCUau--UGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.