Results 81 - 100 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22911 | 3' | -49.8 | NC_005137.2 | + | 107147 | 0.68 | 0.987449 |
Target: 5'- gGCGGguuggGUGACGCcgaccgucaaaaGCUGAgcGACGUGCu -3' miRNA: 3'- -CGUUaa---CGCUGCG------------CGGCUa-UUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 112401 | 0.67 | 0.990345 |
Target: 5'- cGCGAUcGCGcacgGCGCGCCau---UGUGCa -3' miRNA: 3'- -CGUUAaCGC----UGCGCGGcuauuGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 12684 | 0.67 | 0.990345 |
Target: 5'- uGCAGUUugaGCaGCGCGUCGG-AACG-GCg -3' miRNA: 3'- -CGUUAA---CGcUGCGCGGCUaUUGCaCG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 12092 | 0.67 | 0.990345 |
Target: 5'- cGCAAgUGCGAguUGCGCugcagaaaCGGUGACgGUGUu -3' miRNA: 3'- -CGUUaACGCU--GCGCG--------GCUAUUG-CACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 125025 | 0.67 | 0.989537 |
Target: 5'- uCGGUUGCGGCGUggcgcaggcaacggaGCCGGgcgGCGcgGCg -3' miRNA: 3'- cGUUAACGCUGCG---------------CGGCUau-UGCa-CG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 76190 | 0.67 | 0.989398 |
Target: 5'- gGUAAUUGCguuuuugGugGCGCuuuuuauguacguugCGGUAGCGcUGCg -3' miRNA: 3'- -CGUUAACG-------CugCGCG---------------GCUAUUGC-ACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 70695 | 0.67 | 0.988971 |
Target: 5'- uCGGcgGUGGCGCuGCCGAguUAACG-GCu -3' miRNA: 3'- cGUUaaCGCUGCG-CGGCU--AUUGCaCG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 5339 | 0.67 | 0.988971 |
Target: 5'- uGCAAgUGCuGAUGgGCCGGUuuaugcauuuUGUGCg -3' miRNA: 3'- -CGUUaACG-CUGCgCGGCUAuu--------GCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 33048 | 0.67 | 0.991581 |
Target: 5'- aGCAAaUGcCGACGCGUucuaGAgauUGUGCa -3' miRNA: 3'- -CGUUaAC-GCUGCGCGg---CUauuGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 117569 | 0.67 | 0.992583 |
Target: 5'- gGCAAagUGCG-C-CGCCGGUgcggcugacgggcGACGUGUa -3' miRNA: 3'- -CGUUa-ACGCuGcGCGGCUA-------------UUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 95267 | 0.67 | 0.990345 |
Target: 5'- uGCAGaUGCacGAUGCGgaCGGUAACGaGCa -3' miRNA: 3'- -CGUUaACG--CUGCGCg-GCUAUUGCaCG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 122148 | 0.67 | 0.993676 |
Target: 5'- uGUAGUUGUGcCGUGUCGuUGAUGaGCg -3' miRNA: 3'- -CGUUAACGCuGCGCGGCuAUUGCaCG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 26680 | 0.67 | 0.993676 |
Target: 5'- cGCAcgUGCGAacguuugaugGCGCUGA--ACGgcgGCg -3' miRNA: 3'- -CGUuaACGCUg---------CGCGGCUauUGCa--CG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 95644 | 0.67 | 0.992688 |
Target: 5'- cCGcgUGCGccgUGCGCCGAcgGGCaaGUGCg -3' miRNA: 3'- cGUuaACGCu--GCGCGGCUa-UUG--CACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 64772 | 0.67 | 0.992688 |
Target: 5'- cGCAAUUGUauGACGUGuuGAacgcUAGCcgcgccaacauGUGCa -3' miRNA: 3'- -CGUUAACG--CUGCGCggCU----AUUG-----------CACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 28179 | 0.67 | 0.992688 |
Target: 5'- cGCAAUaagGCGACaGCGUC----GCGUGUa -3' miRNA: 3'- -CGUUAa--CGCUG-CGCGGcuauUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 15510 | 0.67 | 0.993676 |
Target: 5'- gGCGGUUGUGACGUuaUaGUAcCGUGUg -3' miRNA: 3'- -CGUUAACGCUGCGcgGcUAUuGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 81388 | 0.67 | 0.991581 |
Target: 5'- gGCAAcgGCGAcCGCauuCCGu--ACGUGCu -3' miRNA: 3'- -CGUUaaCGCU-GCGc--GGCuauUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 40254 | 0.67 | 0.990345 |
Target: 5'- uGCAuuggccgUGUGGCGCGCa---AACGUGUu -3' miRNA: 3'- -CGUua-----ACGCUGCGCGgcuaUUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 98397 | 0.67 | 0.988971 |
Target: 5'- cCGAUUGUGAauaggUGUGCCGGUGA--UGCa -3' miRNA: 3'- cGUUAACGCU-----GCGCGGCUAUUgcACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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