miRNA display CGI


Results 101 - 120 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 3' -49.8 NC_005137.2 + 105713 0.7 0.95018
Target:  5'- ---uUUGCGACcUGCUGuugGGCGUGCa -3'
miRNA:   3'- cguuAACGCUGcGCGGCua-UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 106204 0.66 0.995331
Target:  5'- cGCAcgUGgGACGCGgUCGccaagAACGgGCa -3'
miRNA:   3'- -CGUuaACgCUGCGC-GGCua---UUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 106398 0.69 0.965593
Target:  5'- ---uUUGaCGACGCGUCGGUcAUGUGg -3'
miRNA:   3'- cguuAAC-GCUGCGCGGCUAuUGCACg -5'
22911 3' -49.8 NC_005137.2 + 107147 0.68 0.987449
Target:  5'- gGCGGguuggGUGACGCcgaccgucaaaaGCUGAgcGACGUGCu -3'
miRNA:   3'- -CGUUaa---CGCUGCG------------CGGCUa-UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 107599 0.7 0.954401
Target:  5'- aGCGAUUGUGuugaGCaGCCGuUGACGUuGCc -3'
miRNA:   3'- -CGUUAACGCug--CG-CGGCuAUUGCA-CG- -5'
22911 3' -49.8 NC_005137.2 + 108149 0.66 0.996615
Target:  5'- uCGGgcgGCGGCgGCGUCGGUAuGCGcGCg -3'
miRNA:   3'- cGUUaa-CGCUG-CGCGGCUAU-UGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 108574 0.73 0.871888
Target:  5'- cGUGAUcgGCGGCGCGCCcGUgugcuuuuacGugGUGCg -3'
miRNA:   3'- -CGUUAa-CGCUGCGCGGcUA----------UugCACG- -5'
22911 3' -49.8 NC_005137.2 + 109522 0.75 0.775103
Target:  5'- uGCAcaaGUcGCuGCGUGCCGGUAAUGUGUu -3'
miRNA:   3'- -CGU---UAaCGcUGCGCGGCUAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 110310 0.66 0.996015
Target:  5'- gGCGAUcGUGACGUGUUuGUGcGCGUGUu -3'
miRNA:   3'- -CGUUAaCGCUGCGCGGcUAU-UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 110419 0.69 0.971882
Target:  5'- cGCAGcugGCaacgGGCGCGaCGGUGAgCGUGCa -3'
miRNA:   3'- -CGUUaa-CG----CUGCGCgGCUAUU-GCACG- -5'
22911 3' -49.8 NC_005137.2 + 110572 0.66 0.997138
Target:  5'- cGCAccUGCGucuugGCGCGCCcAUccUGUGCg -3'
miRNA:   3'- -CGUuaACGC-----UGCGCGGcUAuuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 110619 0.66 0.997138
Target:  5'- gGCGGUUagugaccccGUGuACGCGCCGGccGCGgugUGCa -3'
miRNA:   3'- -CGUUAA---------CGC-UGCGCGGCUauUGC---ACG- -5'
22911 3' -49.8 NC_005137.2 + 110630 0.66 0.996615
Target:  5'- gGCcg-UGCacaaACGCGCCGAcGGCGUuugGCu -3'
miRNA:   3'- -CGuuaACGc---UGCGCGGCUaUUGCA---CG- -5'
22911 3' -49.8 NC_005137.2 + 110710 0.66 0.997138
Target:  5'- cGCGcgUGCGcaacgguguGCGCGCaGAgcgcuUGUGCg -3'
miRNA:   3'- -CGUuaACGC---------UGCGCGgCUauu--GCACG- -5'
22911 3' -49.8 NC_005137.2 + 111343 0.66 0.994554
Target:  5'- -aGGUUGUcguaGAUGCuGCUGGUAGCGgGCg -3'
miRNA:   3'- cgUUAACG----CUGCG-CGGCUAUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 111530 0.7 0.962103
Target:  5'- aGCGGcUUGUGAUGUuuuuGCCGAgcuuuuGCGUGUg -3'
miRNA:   3'- -CGUU-AACGCUGCG----CGGCUau----UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 112013 0.74 0.821957
Target:  5'- aGCAAacguaccGUGACGCGCUGc-GACGUGCu -3'
miRNA:   3'- -CGUUaa-----CGCUGCGCGGCuaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 112401 0.67 0.990345
Target:  5'- cGCGAUcGCGcacgGCGCGCCau---UGUGCa -3'
miRNA:   3'- -CGUUAaCGC----UGCGCGGcuauuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 113868 0.79 0.544686
Target:  5'- aUAGUUGCG-CGUGCUGGUGACG-GCa -3'
miRNA:   3'- cGUUAACGCuGCGCGGCUAUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 117459 0.7 0.945706
Target:  5'- aCAGUUGCGcCGCGCUauuaaaGUGACGgucgGCg -3'
miRNA:   3'- cGUUAACGCuGCGCGGc-----UAUUGCa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.