miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22914 3' -51.6 NC_005137.2 + 26535 0.66 0.983336
Target:  5'- -aCCAUCAauGCAAACGCg----GCGCu -3'
miRNA:   3'- ggGGUGGU--CGUUUGCGauaaaCGCGu -5'
22914 3' -51.6 NC_005137.2 + 119892 0.66 0.982731
Target:  5'- gCCCAUUAGCAugcagguugccaugGGCGC----UGCGCGg -3'
miRNA:   3'- gGGGUGGUCGU--------------UUGCGauaaACGCGU- -5'
22914 3' -51.6 NC_005137.2 + 63805 0.66 0.981257
Target:  5'- -aCCGCgGGCGcGACGCga--UGCGCGa -3'
miRNA:   3'- ggGGUGgUCGU-UUGCGauaaACGCGU- -5'
22914 3' -51.6 NC_005137.2 + 16559 0.66 0.981039
Target:  5'- aCCCACCucauuggAGCGAAgugagUGUUAUggaugUGCGCGc -3'
miRNA:   3'- gGGGUGG-------UCGUUU-----GCGAUAa----ACGCGU- -5'
22914 3' -51.6 NC_005137.2 + 57464 0.66 0.97899
Target:  5'- gCCgCGCaacgaGGCcacGACGCcGUUUGCGCGu -3'
miRNA:   3'- -GGgGUGg----UCGu--UUGCGaUAAACGCGU- -5'
22914 3' -51.6 NC_005137.2 + 34861 0.66 0.97899
Target:  5'- -aCCGCaCGGCGggcAACGCga--UGCGCAu -3'
miRNA:   3'- ggGGUG-GUCGU---UUGCGauaaACGCGU- -5'
22914 3' -51.6 NC_005137.2 + 12380 0.66 0.97899
Target:  5'- gCCUAcaauCCAGCGAugaaGCGUUAcaUGCGCGc -3'
miRNA:   3'- gGGGU----GGUCGUU----UGCGAUaaACGCGU- -5'
22914 3' -51.6 NC_005137.2 + 57560 0.66 0.977535
Target:  5'- cCCCCGCCGcGUuuaGAACGCgucgagcccaGCGCGc -3'
miRNA:   3'- -GGGGUGGU-CG---UUUGCGauaaa-----CGCGU- -5'
22914 3' -51.6 NC_005137.2 + 79475 0.66 0.976525
Target:  5'- -aCCACC-GUAGACGUga--UGCGCGg -3'
miRNA:   3'- ggGGUGGuCGUUUGCGauaaACGCGU- -5'
22914 3' -51.6 NC_005137.2 + 111681 0.66 0.976525
Target:  5'- gCUUGCCAGCAGcuCGCUGUacacGCGCc -3'
miRNA:   3'- gGGGUGGUCGUUu-GCGAUAaa--CGCGu -5'
22914 3' -51.6 NC_005137.2 + 96589 0.66 0.976525
Target:  5'- aCCCGCgcaaacgcaacgCGGCGGGCGCgucgccGCGCGg -3'
miRNA:   3'- gGGGUG------------GUCGUUUGCGauaaa-CGCGU- -5'
22914 3' -51.6 NC_005137.2 + 11258 0.66 0.975482
Target:  5'- uCCCCuCCAGCG-GCGCUGacguccgcuacGCGCu -3'
miRNA:   3'- -GGGGuGGUCGUuUGCGAUaaa--------CGCGu -5'
22914 3' -51.6 NC_005137.2 + 54527 0.66 0.973855
Target:  5'- aCgCGCUAGCuu-CGCU--UUGCGCGg -3'
miRNA:   3'- gGgGUGGUCGuuuGCGAuaAACGCGU- -5'
22914 3' -51.6 NC_005137.2 + 67422 0.67 0.970971
Target:  5'- gUCCCAUguGCcGACGCaaaaacGCGCAu -3'
miRNA:   3'- -GGGGUGguCGuUUGCGauaaa-CGCGU- -5'
22914 3' -51.6 NC_005137.2 + 307 0.67 0.970971
Target:  5'- gUCCCAgCGGaGAGCGUg--UUGCGCc -3'
miRNA:   3'- -GGGGUgGUCgUUUGCGauaAACGCGu -5'
22914 3' -51.6 NC_005137.2 + 16499 0.67 0.970368
Target:  5'- gCUUCACCAGCGgacaucccguAGCGUUGUUgcgaacgucgucGCGCAa -3'
miRNA:   3'- -GGGGUGGUCGU----------UUGCGAUAAa-----------CGCGU- -5'
22914 3' -51.6 NC_005137.2 + 79626 0.67 0.965893
Target:  5'- gCCgCGCUAGCAAcagauguuggcauaaACGCguuaaacacgGUUUGUGCAg -3'
miRNA:   3'- -GGgGUGGUCGUU---------------UGCGa---------UAAACGCGU- -5'
22914 3' -51.6 NC_005137.2 + 27552 0.67 0.964531
Target:  5'- cUCCCGCgaaaAGCGuuUGCUGUaUGCGUg -3'
miRNA:   3'- -GGGGUGg---UCGUuuGCGAUAaACGCGu -5'
22914 3' -51.6 NC_005137.2 + 39144 0.67 0.964531
Target:  5'- gCUCCGCCGGCAAAa-Cg----GCGCAa -3'
miRNA:   3'- -GGGGUGGUCGUUUgcGauaaaCGCGU- -5'
22914 3' -51.6 NC_005137.2 + 48553 0.67 0.964531
Target:  5'- aCCCCGugGGCGAGgGCUuuuacaaUUGCGCc -3'
miRNA:   3'- -GGGGUggUCGUUUgCGAua-----AACGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.