miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22914 3' -51.6 NC_005137.2 + 307 0.67 0.970971
Target:  5'- gUCCCAgCGGaGAGCGUg--UUGCGCc -3'
miRNA:   3'- -GGGGUgGUCgUUUGCGauaAACGCGu -5'
22914 3' -51.6 NC_005137.2 + 4165 0.78 0.489591
Target:  5'- gCCCCAUCAgGCAAGCGCUugGUUUGCcCGc -3'
miRNA:   3'- -GGGGUGGU-CGUUUGCGA--UAAACGcGU- -5'
22914 3' -51.6 NC_005137.2 + 11258 0.66 0.975482
Target:  5'- uCCCCuCCAGCG-GCGCUGacguccgcuacGCGCu -3'
miRNA:   3'- -GGGGuGGUCGUuUGCGAUaaa--------CGCGu -5'
22914 3' -51.6 NC_005137.2 + 12380 0.66 0.97899
Target:  5'- gCCUAcaauCCAGCGAugaaGCGUUAcaUGCGCGc -3'
miRNA:   3'- gGGGU----GGUCGUU----UGCGAUaaACGCGU- -5'
22914 3' -51.6 NC_005137.2 + 16499 0.67 0.970368
Target:  5'- gCUUCACCAGCGgacaucccguAGCGUUGUUgcgaacgucgucGCGCAa -3'
miRNA:   3'- -GGGGUGGUCGU----------UUGCGAUAAa-----------CGCGU- -5'
22914 3' -51.6 NC_005137.2 + 16559 0.66 0.981039
Target:  5'- aCCCACCucauuggAGCGAAgugagUGUUAUggaugUGCGCGc -3'
miRNA:   3'- gGGGUGG-------UCGUUU-----GCGAUAa----ACGCGU- -5'
22914 3' -51.6 NC_005137.2 + 26535 0.66 0.983336
Target:  5'- -aCCAUCAauGCAAACGCg----GCGCu -3'
miRNA:   3'- ggGGUGGU--CGUUUGCGauaaaCGCGu -5'
22914 3' -51.6 NC_005137.2 + 27483 0.67 0.960962
Target:  5'- gCgCCGCCAGUcAAUGCUAgaaaaUGCGUu -3'
miRNA:   3'- -GgGGUGGUCGuUUGCGAUaa---ACGCGu -5'
22914 3' -51.6 NC_005137.2 + 27552 0.67 0.964531
Target:  5'- cUCCCGCgaaaAGCGuuUGCUGUaUGCGUg -3'
miRNA:   3'- -GGGGUGg---UCGUuuGCGAUAaACGCGu -5'
22914 3' -51.6 NC_005137.2 + 30806 0.72 0.781409
Target:  5'- gCgCACCAGCAAcACGUUGggagugUGCGCGu -3'
miRNA:   3'- gGgGUGGUCGUU-UGCGAUaa----ACGCGU- -5'
22914 3' -51.6 NC_005137.2 + 34676 0.69 0.917518
Target:  5'- aCCgCACCAGCAAGCGCcg--UGgGg- -3'
miRNA:   3'- -GGgGUGGUCGUUUGCGauaaACgCgu -5'
22914 3' -51.6 NC_005137.2 + 34861 0.66 0.97899
Target:  5'- -aCCGCaCGGCGggcAACGCga--UGCGCAu -3'
miRNA:   3'- ggGGUG-GUCGU---UUGCGauaaACGCGU- -5'
22914 3' -51.6 NC_005137.2 + 39144 0.67 0.964531
Target:  5'- gCUCCGCCGGCAAAa-Cg----GCGCAa -3'
miRNA:   3'- -GGGGUGGUCGUUUgcGauaaaCGCGU- -5'
22914 3' -51.6 NC_005137.2 + 41985 0.75 0.636238
Target:  5'- aCCUCACCAGCGcuaacaAACGCgug--GCGCGc -3'
miRNA:   3'- -GGGGUGGUCGU------UUGCGauaaaCGCGU- -5'
22914 3' -51.6 NC_005137.2 + 42417 0.68 0.943284
Target:  5'- gCCCCGCCGGgAcACGUnAUguguccgccgcGCGCAa -3'
miRNA:   3'- -GGGGUGGUCgUuUGCGaUAaa---------CGCGU- -5'
22914 3' -51.6 NC_005137.2 + 43926 0.68 0.934328
Target:  5'- aCCCGCUGGCGcgcugguaguAGCGUUcgUUGgCGCGc -3'
miRNA:   3'- gGGGUGGUCGU----------UUGCGAuaAAC-GCGU- -5'
22914 3' -51.6 NC_005137.2 + 48553 0.67 0.964531
Target:  5'- aCCCCGugGGCGAGgGCUuuuacaaUUGCGCc -3'
miRNA:   3'- -GGGGUggUCGUUUgCGAua-----AACGCGu -5'
22914 3' -51.6 NC_005137.2 + 54527 0.66 0.973855
Target:  5'- aCgCGCUAGCuu-CGCU--UUGCGCGg -3'
miRNA:   3'- gGgGUGGUCGuuuGCGAuaAACGCGU- -5'
22914 3' -51.6 NC_005137.2 + 57464 0.66 0.97899
Target:  5'- gCCgCGCaacgaGGCcacGACGCcGUUUGCGCGu -3'
miRNA:   3'- -GGgGUGg----UCGu--UUGCGaUAAACGCGU- -5'
22914 3' -51.6 NC_005137.2 + 57560 0.66 0.977535
Target:  5'- cCCCCGCCGcGUuuaGAACGCgucgagcccaGCGCGc -3'
miRNA:   3'- -GGGGUGGU-CG---UUUGCGauaaa-----CGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.