miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22914 5' -49.2 NC_005137.2 + 29996 0.72 0.878016
Target:  5'- --aGCGCGCGAcccuuUUUUAGCGCgGcgGAa -3'
miRNA:   3'- uugCGCGUGUU-----AAAAUCGCGgCuaCU- -5'
22914 5' -49.2 NC_005137.2 + 33132 0.73 0.845363
Target:  5'- uGCGCGCACuuggucAGCGCCgGGUGGc -3'
miRNA:   3'- uUGCGCGUGuuaaaaUCGCGG-CUACU- -5'
22914 5' -49.2 NC_005137.2 + 102278 0.75 0.769962
Target:  5'- gAACGUGUGgAAUggUGGCGUCGGUGAu -3'
miRNA:   3'- -UUGCGCGUgUUAaaAUCGCGGCUACU- -5'
22914 5' -49.2 NC_005137.2 + 129207 1.08 0.011501
Target:  5'- cAACGCGCACAAUUUUAGCGCCGAUGAa -3'
miRNA:   3'- -UUGCGCGUGUUAAAAUCGCGGCUACU- -5'
22914 5' -49.2 NC_005137.2 + 96662 0.67 0.991058
Target:  5'- uGCGCGcCGCuAGUcaUAGCGCCcGUGGa -3'
miRNA:   3'- uUGCGC-GUG-UUAaaAUCGCGGcUACU- -5'
22914 5' -49.2 NC_005137.2 + 56099 0.67 0.991058
Target:  5'- cAACGCGCGguGUUcaGGCGCCa---- -3'
miRNA:   3'- -UUGCGCGUguUAAaaUCGCGGcuacu -5'
22914 5' -49.2 NC_005137.2 + 46874 0.67 0.991058
Target:  5'- gGugGCGCGCGuggaaacGGUGUCGAUGu -3'
miRNA:   3'- -UugCGCGUGUuaaaa--UCGCGGCUACu -5'
22914 5' -49.2 NC_005137.2 + 128863 0.67 0.991552
Target:  5'- gGGCGUGCACGAcggcacguuggaauaUUUUAGCcCCGAa-- -3'
miRNA:   3'- -UUGCGCGUGUU---------------AAAAUCGcGGCUacu -5'
22914 5' -49.2 NC_005137.2 + 2627 0.66 0.993314
Target:  5'- cACGCgGCGCAuaaaUAGCGCgCGAUaGAg -3'
miRNA:   3'- uUGCG-CGUGUuaaaAUCGCG-GCUA-CU- -5'
22914 5' -49.2 NC_005137.2 + 19691 0.66 0.995822
Target:  5'- cGGCGgGCACAgaacgccuucGUUUgccUGGCGCCGuuuccguUGAa -3'
miRNA:   3'- -UUGCgCGUGU----------UAAA---AUCGCGGCu------ACU- -5'
22914 5' -49.2 NC_005137.2 + 45609 0.66 0.996462
Target:  5'- aAACGCGUGCGcgUgcuGCGCCGc--- -3'
miRNA:   3'- -UUGCGCGUGUuaAaauCGCGGCuacu -5'
22914 5' -49.2 NC_005137.2 + 1690 0.72 0.870216
Target:  5'- cAACGCGCGCAAUcUUAGUcCCGAc-- -3'
miRNA:   3'- -UUGCGCGUGUUAaAAUCGcGGCUacu -5'
22914 5' -49.2 NC_005137.2 + 41822 0.79 0.543528
Target:  5'- cGGCGCGcCACGcgUuugUUAGCGCUGGUGAg -3'
miRNA:   3'- -UUGCGC-GUGUuaA---AAUCGCGGCUACU- -5'
22914 5' -49.2 NC_005137.2 + 28520 0.7 0.955108
Target:  5'- uGACGCGC---GUUUcGGCGuuGAUGAc -3'
miRNA:   3'- -UUGCGCGuguUAAAaUCGCggCUACU- -5'
22914 5' -49.2 NC_005137.2 + 124933 0.69 0.971896
Target:  5'- uGAUGUGCuugaucgccggguuGCGAUgaacgcGGCGCCGGUGAu -3'
miRNA:   3'- -UUGCGCG--------------UGUUAaaa---UCGCGGCUACU- -5'
22914 5' -49.2 NC_005137.2 + 123105 0.69 0.973078
Target:  5'- aAAUGCGCAauggagcuGCGCCGGUGu -3'
miRNA:   3'- -UUGCGCGUguuaaaauCGCGGCUACu -5'
22914 5' -49.2 NC_005137.2 + 93681 0.68 0.978206
Target:  5'- aGAUGCGCaACAGgcccAGCGCCGGa-- -3'
miRNA:   3'- -UUGCGCG-UGUUaaaaUCGCGGCUacu -5'
22914 5' -49.2 NC_005137.2 + 60512 0.67 0.988242
Target:  5'- cACGUGCucaAAUUgUGGCGCUGAUuGAa -3'
miRNA:   3'- uUGCGCGug-UUAAaAUCGCGGCUA-CU- -5'
22914 5' -49.2 NC_005137.2 + 54746 0.67 0.989725
Target:  5'- uGGCGCGCACAAc-----CGCCGAaaUGGa -3'
miRNA:   3'- -UUGCGCGUGUUaaaaucGCGGCU--ACU- -5'
22914 5' -49.2 NC_005137.2 + 61542 0.67 0.989725
Target:  5'- cGCGCGCGCGAUUUUuuuCGuuGAg-- -3'
miRNA:   3'- uUGCGCGUGUUAAAAuc-GCggCUacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.