Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 22914 | 5' | -49.2 | NC_005137.2 | + | 63420 | 0.71 | 0.925261 |
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Target: 5'- -cCGUGUugGAgUUUGGCGCCGAa-- -3' miRNA: 3'- uuGCGCGugUUaAAAUCGCGGCUacu -5' |
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| 22914 | 5' | -49.2 | NC_005137.2 | + | 29996 | 0.72 | 0.878016 |
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Target: 5'- --aGCGCGCGAcccuuUUUUAGCGCgGcgGAa -3' miRNA: 3'- uugCGCGUGUU-----AAAAUCGCGgCuaCU- -5' |
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| 22914 | 5' | -49.2 | NC_005137.2 | + | 1690 | 0.72 | 0.870216 |
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Target: 5'- cAACGCGCGCAAUcUUAGUcCCGAc-- -3' miRNA: 3'- -UUGCGCGUGUUAaAAUCGcGGCUacu -5' |
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| 22914 | 5' | -49.2 | NC_005137.2 | + | 33132 | 0.73 | 0.845363 |
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Target: 5'- uGCGCGCACuuggucAGCGCCgGGUGGc -3' miRNA: 3'- uUGCGCGUGuuaaaaUCGCGG-CUACU- -5' |
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| 22914 | 5' | -49.2 | NC_005137.2 | + | 102278 | 0.75 | 0.769962 |
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Target: 5'- gAACGUGUGgAAUggUGGCGUCGGUGAu -3' miRNA: 3'- -UUGCGCGUgUUAaaAUCGCGGCUACU- -5' |
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| 22914 | 5' | -49.2 | NC_005137.2 | + | 41822 | 0.79 | 0.543528 |
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Target: 5'- cGGCGCGcCACGcgUuugUUAGCGCUGGUGAg -3' miRNA: 3'- -UUGCGC-GUGUuaA---AAUCGCGGCUACU- -5' |
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| 22914 | 5' | -49.2 | NC_005137.2 | + | 129207 | 1.08 | 0.011501 |
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Target: 5'- cAACGCGCACAAUUUUAGCGCCGAUGAa -3' miRNA: 3'- -UUGCGCGUGUUAAAAUCGCGGCUACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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