miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22916 5' -53.6 NC_005137.2 + 95654 0.71 0.757226
Target:  5'- cGUGCGCCGAcgGGCAagugcGCCUGGAUc -3'
miRNA:   3'- aCGUGCGGCUaaUUGUa----CGGGCCUGu -5'
22916 5' -53.6 NC_005137.2 + 130955 0.7 0.767034
Target:  5'- cGCGCGCuuuuauacaagCGGUUGACGcGCCCGaaGACAu -3'
miRNA:   3'- aCGUGCG-----------GCUAAUUGUaCGGGC--CUGU- -5'
22916 5' -53.6 NC_005137.2 + 119580 0.7 0.803969
Target:  5'- cGCACGCUGAgc-ACGUGCcacacuuCCGGAaCAa -3'
miRNA:   3'- aCGUGCGGCUaauUGUACG-------GGCCU-GU- -5'
22916 5' -53.6 NC_005137.2 + 108116 0.69 0.822849
Target:  5'- uUGCGCGCCGAUcgcagcaccGCAU-CCCGGuCGu -3'
miRNA:   3'- -ACGUGCGGCUAau-------UGUAcGGGCCuGU- -5'
22916 5' -53.6 NC_005137.2 + 95776 0.68 0.862042
Target:  5'- cGCACGUCGG--GACGUuugauuagccacacGaCCCGGACGg -3'
miRNA:   3'- aCGUGCGGCUaaUUGUA--------------C-GGGCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 56669 0.68 0.872053
Target:  5'- gUGCuuGCCGAcggcgcugugGACGUGaCCGGACGc -3'
miRNA:   3'- -ACGugCGGCUaa--------UUGUACgGGCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 110727 0.67 0.900379
Target:  5'- gUGCGCGCaGAgcgcuUGUGCgCCGGGCGa -3'
miRNA:   3'- -ACGUGCGgCUaauu-GUACG-GGCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 29515 0.67 0.913074
Target:  5'- aGCACGCCaGUUuuuguGgGUGCgCCGcGACAa -3'
miRNA:   3'- aCGUGCGGcUAAu----UgUACG-GGC-CUGU- -5'
22916 5' -53.6 NC_005137.2 + 7623 0.67 0.92476
Target:  5'- aUGCAuuucagaguuuCGCCGGccAGCGUGCCCaGAUu -3'
miRNA:   3'- -ACGU-----------GCGGCUaaUUGUACGGGcCUGu -5'
22916 5' -53.6 NC_005137.2 + 75232 0.67 0.92476
Target:  5'- cUGCugGCCGAaaugaUGGcCGUGaCCgCGGGCGc -3'
miRNA:   3'- -ACGugCGGCUa----AUU-GUAC-GG-GCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 114239 0.66 0.940382
Target:  5'- uUGCACGCCGu---GCAauagCCGGACu -3'
miRNA:   3'- -ACGUGCGGCuaauUGUacg-GGCCUGu -5'
22916 5' -53.6 NC_005137.2 + 4319 1.09 0.003925
Target:  5'- aUGCACGCCGAUUAACAUGCCCGGACAc -3'
miRNA:   3'- -ACGUGCGGCUAAUUGUACGGGCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.