miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22917 3' -46.3 NC_005137.2 + 38971 0.66 0.99975
Target:  5'- -gAUCGcGUUGCccgugcucaaauACCGuguGGGCAGCGa -3'
miRNA:   3'- caUAGUuUAACG------------UGGCu--UCCGUUGCg -5'
22917 3' -46.3 NC_005137.2 + 45659 0.67 0.99968
Target:  5'- -gAUCAAcgUGUACaccaacgugGgcGGCGGCGCc -3'
miRNA:   3'- caUAGUUuaACGUGg--------CuuCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 46647 0.68 0.9992
Target:  5'- ---aCAGcg-GCGCUaAGGGCAGCGCc -3'
miRNA:   3'- cauaGUUuaaCGUGGcUUCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 48749 0.7 0.991858
Target:  5'- -------cUUGuCGCCGAacaAGGCGGCGCg -3'
miRNA:   3'- cauaguuuAAC-GUGGCU---UCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 51235 0.7 0.991858
Target:  5'- gGUGUUGGAcUGCAaaGggGGCAaaucguagcgGCGCa -3'
miRNA:   3'- -CAUAGUUUaACGUggCuuCCGU----------UGCG- -5'
22917 3' -46.3 NC_005137.2 + 52620 0.68 0.9992
Target:  5'- --uUCAccguaaaacGGUUGCGgCGGAGGCGcuugaaacggaaGCGCg -3'
miRNA:   3'- cauAGU---------UUAACGUgGCUUCCGU------------UGCG- -5'
22917 3' -46.3 NC_005137.2 + 56568 0.66 0.999887
Target:  5'- ---cCAAuuuUUGCGCCGuuauGGGaccCGACGCg -3'
miRNA:   3'- cauaGUUu--AACGUGGCu---UCC---GUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 62382 0.67 0.999357
Target:  5'- ---aCAAuggUGCAgCGGAcagaucgcGGCAGCGCa -3'
miRNA:   3'- cauaGUUua-ACGUgGCUU--------CCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 63191 0.66 0.999866
Target:  5'- uUGUCA---UGCAacgccuccaauucguCUGAAGGCAuuauGCGCa -3'
miRNA:   3'- cAUAGUuuaACGU---------------GGCUUCCGU----UGCG- -5'
22917 3' -46.3 NC_005137.2 + 63471 0.66 0.99975
Target:  5'- -cGUCugacAUUGUAgUGAGGGC-GCGCg -3'
miRNA:   3'- caUAGuu--UAACGUgGCUUCCGuUGCG- -5'
22917 3' -46.3 NC_005137.2 + 63885 0.68 0.99901
Target:  5'- -aAUCAAAacgaaaaUGCugCG--GGCAACGCa -3'
miRNA:   3'- caUAGUUUa------ACGugGCuuCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 64325 0.66 0.999887
Target:  5'- ---cCAAuUUGC-CCGAGGGCAcAgGCc -3'
miRNA:   3'- cauaGUUuAACGuGGCUUCCGU-UgCG- -5'
22917 3' -46.3 NC_005137.2 + 64808 0.74 0.95288
Target:  5'- ---aCAug-UGCACCGAaucGGGCGACGg -3'
miRNA:   3'- cauaGUuuaACGUGGCU---UCCGUUGCg -5'
22917 3' -46.3 NC_005137.2 + 68471 0.68 0.998513
Target:  5'- -cGUCGAccGUUGCgacaacacGCCGggGGauacaAGCGCc -3'
miRNA:   3'- caUAGUU--UAACG--------UGGCuuCCg----UUGCG- -5'
22917 3' -46.3 NC_005137.2 + 71363 0.68 0.99901
Target:  5'- -cGUCGGccgcGUUG-ACUGucGGCGACGCg -3'
miRNA:   3'- caUAGUU----UAACgUGGCuuCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 72067 0.72 0.979598
Target:  5'- -gGUCGAcUUGCACCGAAucgcuGCucuGCGCg -3'
miRNA:   3'- caUAGUUuAACGUGGCUUc----CGu--UGCG- -5'
22917 3' -46.3 NC_005137.2 + 72515 0.67 0.999487
Target:  5'- cGUGUacacUAGcgUGCACgCGGA-GCGGCGCa -3'
miRNA:   3'- -CAUA----GUUuaACGUG-GCUUcCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 75319 0.71 0.987638
Target:  5'- -aAUUAAAgUGCG-CGAGGGCAugGUa -3'
miRNA:   3'- caUAGUUUaACGUgGCUUCCGUugCG- -5'
22917 3' -46.3 NC_005137.2 + 77236 0.66 0.999851
Target:  5'- -cGUCAAGaaaugcccuUUGC-CCGugcgcgauuGGCAACGCu -3'
miRNA:   3'- caUAGUUU---------AACGuGGCuu-------CCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 86391 0.73 0.957103
Target:  5'- uGUAagCAAAguggGUGCCGAGGGCA-CGCu -3'
miRNA:   3'- -CAUa-GUUUaa--CGUGGCUUCCGUuGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.