miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22917 5' -53.8 NC_005137.2 + 7695 1.1 0.002947
Target:  5'- gGCACGUAAUGCCUGCGGCGCAUGACUg -3'
miRNA:   3'- -CGUGCAUUACGGACGCCGCGUACUGA- -5'
22917 5' -53.8 NC_005137.2 + 67695 0.75 0.518761
Target:  5'- cGCGCGUuuGUGCCgccucGCGGCGU-UGACa -3'
miRNA:   3'- -CGUGCAu-UACGGa----CGCCGCGuACUGa -5'
22917 5' -53.8 NC_005137.2 + 5400 0.75 0.518761
Target:  5'- cGCGCGUuu--CgaGCGGCGCGUGGCa -3'
miRNA:   3'- -CGUGCAuuacGgaCGCCGCGUACUGa -5'
22917 5' -53.8 NC_005137.2 + 129992 0.73 0.612119
Target:  5'- gGUACGU--UGUCUcGCGGCGCGgcUGACg -3'
miRNA:   3'- -CGUGCAuuACGGA-CGCCGCGU--ACUGa -5'
22917 5' -53.8 NC_005137.2 + 1997 0.73 0.612119
Target:  5'- cCGCGUGcacagcucGUGCacgCUGCGGCGCA-GACUa -3'
miRNA:   3'- cGUGCAU--------UACG---GACGCCGCGUaCUGA- -5'
22917 5' -53.8 NC_005137.2 + 100058 0.73 0.620561
Target:  5'- gGCGCGUucagcaugcuuuGUGCC-GCGGCGCGcGGCa -3'
miRNA:   3'- -CGUGCAu-----------UACGGaCGCCGCGUaCUGa -5'
22917 5' -53.8 NC_005137.2 + 131047 0.71 0.727139
Target:  5'- uGUACGUAAaa-CUGCGGCGCGUccgcGGCg -3'
miRNA:   3'- -CGUGCAUUacgGACGCCGCGUA----CUGa -5'
22917 5' -53.8 NC_005137.2 + 32881 0.7 0.795648
Target:  5'- cGCGCGUAcgacgacgcgGUaGCCgGCGGCG-GUGACa -3'
miRNA:   3'- -CGUGCAU----------UA-CGGaCGCCGCgUACUGa -5'
22917 5' -53.8 NC_005137.2 + 20957 0.69 0.813955
Target:  5'- -uGCGUcugcUGCCUGCGGCGCGc---- -3'
miRNA:   3'- cgUGCAuu--ACGGACGCCGCGUacuga -5'
22917 5' -53.8 NC_005137.2 + 12219 0.69 0.840075
Target:  5'- gGCgACGUGAuUGCCgaccgacugGCGuaucaauuGCGCAUGACUa -3'
miRNA:   3'- -CG-UGCAUU-ACGGa--------CGC--------CGCGUACUGA- -5'
22917 5' -53.8 NC_005137.2 + 104616 0.68 0.856496
Target:  5'- aCACGUGcaacaagucGUGgCgCUGCGGCGUGUcGACUg -3'
miRNA:   3'- cGUGCAU---------UAC-G-GACGCCGCGUA-CUGA- -5'
22917 5' -53.8 NC_005137.2 + 63363 0.68 0.859678
Target:  5'- uGCGCaUAAUGCCUucagacgaauuggagGCGuuGCAUGACa -3'
miRNA:   3'- -CGUGcAUUACGGA---------------CGCcgCGUACUGa -5'
22917 5' -53.8 NC_005137.2 + 101159 0.68 0.863607
Target:  5'- cCAUGUAcgGCC-GCGGUuggacagGCGUGGCa -3'
miRNA:   3'- cGUGCAUuaCGGaCGCCG-------CGUACUGa -5'
22917 5' -53.8 NC_005137.2 + 72294 0.68 0.863607
Target:  5'- uGCACGU-GUGCCUaauugacgccaacGCGGCGCc--ACUg -3'
miRNA:   3'- -CGUGCAuUACGGA-------------CGCCGCGuacUGA- -5'
22917 5' -53.8 NC_005137.2 + 31039 0.68 0.872053
Target:  5'- --uUGaAGUGgCUGCGGCGCAUuGGCg -3'
miRNA:   3'- cguGCaUUACgGACGCCGCGUA-CUGa -5'
22917 5' -53.8 NC_005137.2 + 27942 0.68 0.872053
Target:  5'- cGCACc----GCUUGCGGaaaGCGUGACa -3'
miRNA:   3'- -CGUGcauuaCGGACGCCg--CGUACUGa -5'
22917 5' -53.8 NC_005137.2 + 100407 0.68 0.886695
Target:  5'- cGCGCGcccGUGCgUUGCGGCGCccgGAUc -3'
miRNA:   3'- -CGUGCau-UACG-GACGCCGCGua-CUGa -5'
22917 5' -53.8 NC_005137.2 + 96493 0.68 0.886695
Target:  5'- uGCGCGUcGUGUCcacgGGCGCuAUGACUa -3'
miRNA:   3'- -CGUGCAuUACGGacg-CCGCG-UACUGA- -5'
22917 5' -53.8 NC_005137.2 + 106280 0.67 0.893658
Target:  5'- gGCACGcGAUGCCccaCGGCGCcaAUGuCUg -3'
miRNA:   3'- -CGUGCaUUACGGac-GCCGCG--UACuGA- -5'
22917 5' -53.8 NC_005137.2 + 63450 0.67 0.900379
Target:  5'- cGCGCGUuGUGCCcGCGaGCGac-GGCg -3'
miRNA:   3'- -CGUGCAuUACGGaCGC-CGCguaCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.