miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22919 5' -52.6 NC_005137.2 + 123499 0.66 0.968399
Target:  5'- aAGuuCGUCGggcgCGGUUGGCGCagCGUCc -3'
miRNA:   3'- -UCu-GCGGUaa--GCUAAUCGCGagGCAG- -5'
22919 5' -52.6 NC_005137.2 + 87471 0.66 0.965138
Target:  5'- -uGCGCCGuUUCGcgacGCGCUUCGUUa -3'
miRNA:   3'- ucUGCGGU-AAGCuaauCGCGAGGCAG- -5'
22919 5' -52.6 NC_005137.2 + 63801 0.66 0.961649
Target:  5'- cGGGCGCgAcgCGAU--GCGCgaCCGUCg -3'
miRNA:   3'- -UCUGCGgUaaGCUAauCGCGa-GGCAG- -5'
22919 5' -52.6 NC_005137.2 + 125216 0.67 0.953548
Target:  5'- -uGCGCCGUUCaGAUccGGCGCcgcgccgcccggcUCCGUUg -3'
miRNA:   3'- ucUGCGGUAAG-CUAa-UCGCG-------------AGGCAG- -5'
22919 5' -52.6 NC_005137.2 + 57253 0.67 0.940579
Target:  5'- aGGGCGUCA-UCGuuUUGGCGCgcCCGUg -3'
miRNA:   3'- -UCUGCGGUaAGCu-AAUCGCGa-GGCAg -5'
22919 5' -52.6 NC_005137.2 + 31036 0.68 0.906944
Target:  5'- aAGugGCUGcggCGcAUUGGCGUUCgGUCg -3'
miRNA:   3'- -UCugCGGUaa-GC-UAAUCGCGAGgCAG- -5'
22919 5' -52.6 NC_005137.2 + 12737 1.09 0.004947
Target:  5'- cAGACGCCAUUCGAUUAGCGCUCCGUCc -3'
miRNA:   3'- -UCUGCGGUAAGCUAAUCGCGAGGCAG- -5'
22919 5' -52.6 NC_005137.2 + 57481 0.74 0.621397
Target:  5'- cGACGCCGUUUGc---GCGUUUCGUCa -3'
miRNA:   3'- uCUGCGGUAAGCuaauCGCGAGGCAG- -5'
22919 5' -52.6 NC_005137.2 + 104099 0.72 0.726355
Target:  5'- uGACGCCAUgugCGgg-GGCGCUCUuUCa -3'
miRNA:   3'- uCUGCGGUAa--GCuaaUCGCGAGGcAG- -5'
22919 5' -52.6 NC_005137.2 + 69014 0.71 0.804499
Target:  5'- cGACGCCAUUC---UGGCGCgcaUCCGg- -3'
miRNA:   3'- uCUGCGGUAAGcuaAUCGCG---AGGCag -5'
22919 5' -52.6 NC_005137.2 + 22429 0.69 0.886705
Target:  5'- cGGAgCGUCAcgucggCGAUUugggcaacguGCGCUCCGUCg -3'
miRNA:   3'- -UCU-GCGGUaa----GCUAAu---------CGCGAGGCAG- -5'
22919 5' -52.6 NC_005137.2 + 97522 0.68 0.913189
Target:  5'- cAGACGCCAUuaauUUGAUUacAGCGUUgUGUg -3'
miRNA:   3'- -UCUGCGGUA----AGCUAA--UCGCGAgGCAg -5'
22919 5' -52.6 NC_005137.2 + 24546 0.68 0.930392
Target:  5'- aAGACGCCGUacuugaaGAUUGuGCGCUaCUGUg -3'
miRNA:   3'- -UCUGCGGUAag-----CUAAU-CGCGA-GGCAg -5'
22919 5' -52.6 NC_005137.2 + 47039 0.67 0.945289
Target:  5'- uGGACGCCugcaccgcUUCGAcaAGCuGCUCCuugGUCa -3'
miRNA:   3'- -UCUGCGGu-------AAGCUaaUCG-CGAGG---CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.