miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2292 3' -59.9 NC_001408.1 + 5849 0.67 0.076293
Target:  5'- -gUAAuGCgCGCAGCCCCCg-C-CCGGGu -3'
miRNA:   3'- ggAUU-CG-GCGUCGGGGGagGuGGUCC- -5'
2292 3' -59.9 NC_001408.1 + 236 1.12 0.000009
Target:  5'- cCCUAAGCCGCAGCCCCCUCCACCAGGg -3'
miRNA:   3'- -GGAUUCGGCGUCGGGGGAGGUGGUCC- -5'
2292 3' -59.9 NC_001408.1 + 637 0.72 0.029416
Target:  5'- uCCUcucGAGCCGCcuucaauGCCCCCaaaaccaaUCC-CCAGGu -3'
miRNA:   3'- -GGA---UUCGGCGu------CGGGGG--------AGGuGGUCC- -5'
2292 3' -59.9 NC_001408.1 + 958 0.68 0.067
Target:  5'- cCCUGGcccuGCUGCucuCCCaCCcCCGCCAGGg -3'
miRNA:   3'- -GGAUU----CGGCGuc-GGG-GGaGGUGGUCC- -5'
2292 3' -59.9 NC_001408.1 + 4699 0.66 0.086815
Target:  5'- --gGAGCCGguuGGCCCgCUCUACCAu- -3'
miRNA:   3'- ggaUUCGGCg--UCGGGgGAGGUGGUcc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.