Results 21 - 40 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22920 | 3' | -54.3 | NC_005137.2 | + | 7847 | 0.66 | 0.93922 |
Target: 5'- -aUGCGCCG-CAgGCAUuacguGCCCAUg- -3' miRNA: 3'- ugAUGCGGCuGUgCGUAu----UGGGUGga -5' |
|||||||
22920 | 3' | -54.3 | NC_005137.2 | + | 63169 | 0.72 | 0.623236 |
Target: 5'- aGCU-UGCCGACACGCcgGcGCCgCACCa -3' miRNA: 3'- -UGAuGCGGCUGUGCGuaU-UGG-GUGGa -5' |
|||||||
22920 | 3' | -54.3 | NC_005137.2 | + | 88200 | 0.74 | 0.540317 |
Target: 5'- gGCcACGCCGuccCACGUgGUGGCCCGCCUc -3' miRNA: 3'- -UGaUGCGGCu--GUGCG-UAUUGGGUGGA- -5' |
|||||||
22920 | 3' | -54.3 | NC_005137.2 | + | 81744 | 0.69 | 0.785561 |
Target: 5'- uACUGCuGCCGcguCACGCGUcaagauuuGACCCGCg- -3' miRNA: 3'- -UGAUG-CGGCu--GUGCGUA--------UUGGGUGga -5' |
|||||||
22920 | 3' | -54.3 | NC_005137.2 | + | 68585 | 0.75 | 0.490357 |
Target: 5'- gGCUGCGCCGACuCGUucAACCCgugcGCCa -3' miRNA: 3'- -UGAUGCGGCUGuGCGuaUUGGG----UGGa -5' |
|||||||
22920 | 3' | -54.3 | NC_005137.2 | + | 78816 | 0.72 | 0.632666 |
Target: 5'- cGCUAUuaGCCGACACGCAUuugacacAACUCGCa- -3' miRNA: 3'- -UGAUG--CGGCUGUGCGUA-------UUGGGUGga -5' |
|||||||
22920 | 3' | -54.3 | NC_005137.2 | + | 25857 | 0.77 | 0.372143 |
Target: 5'- gACU-CGCCGACAcCGCGUcccAAUCCACCUu -3' miRNA: 3'- -UGAuGCGGCUGU-GCGUA---UUGGGUGGA- -5' |
|||||||
22920 | 3' | -54.3 | NC_005137.2 | + | 50627 | 0.66 | 0.92355 |
Target: 5'- --cACGCCGGCACGgGgcuGCagCACCUu -3' miRNA: 3'- ugaUGCGGCUGUGCgUau-UGg-GUGGA- -5' |
|||||||
22920 | 3' | -54.3 | NC_005137.2 | + | 70592 | 0.66 | 0.93922 |
Target: 5'- uGCUGCGCgGGCggcuuuuuguuGCGCugAAUCCACUUg -3' miRNA: 3'- -UGAUGCGgCUG-----------UGCGuaUUGGGUGGA- -5' |
|||||||
22920 | 3' | -54.3 | NC_005137.2 | + | 13263 | 0.7 | 0.766475 |
Target: 5'- gGCUAUagGCCGGCGUGgGUAGCaCCGCCa -3' miRNA: 3'- -UGAUG--CGGCUGUGCgUAUUG-GGUGGa -5' |
|||||||
22920 | 3' | -54.3 | NC_005137.2 | + | 48888 | 0.66 | 0.934247 |
Target: 5'- uACUGCGCCG-CGCuGCGgc-UUCGCCUg -3' miRNA: 3'- -UGAUGCGGCuGUG-CGUauuGGGUGGA- -5' |
|||||||
22920 | 3' | -54.3 | NC_005137.2 | + | 81800 | 0.69 | 0.793966 |
Target: 5'- uUUGCGUCGcGCGuCGCGUAucgauguGCCCACCg -3' miRNA: 3'- uGAUGCGGC-UGU-GCGUAU-------UGGGUGGa -5' |
|||||||
22920 | 3' | -54.3 | NC_005137.2 | + | 42132 | 0.69 | 0.794893 |
Target: 5'- cGCUGCGuUCGACGCGUGgaa-CCGCCg -3' miRNA: 3'- -UGAUGC-GGCUGUGCGUauugGGUGGa -5' |
|||||||
22920 | 3' | -54.3 | NC_005137.2 | + | 59946 | 0.66 | 0.929023 |
Target: 5'- aGCUggcGCGCCucguuGAUGCGCAU-GCCCguACCUa -3' miRNA: 3'- -UGA---UGCGG-----CUGUGCGUAuUGGG--UGGA- -5' |
|||||||
22920 | 3' | -54.3 | NC_005137.2 | + | 20954 | 0.68 | 0.839058 |
Target: 5'- gACUGCGUcugcugccugCGGCGCGCGUuuuGCCgCGCUUg -3' miRNA: 3'- -UGAUGCG----------GCUGUGCGUAu--UGG-GUGGA- -5' |
|||||||
22920 | 3' | -54.3 | NC_005137.2 | + | 115881 | 0.67 | 0.878316 |
Target: 5'- uGCUugGCaaCGACGCGUGUug-CCACCa -3' miRNA: 3'- -UGAugCG--GCUGUGCGUAuugGGUGGa -5' |
|||||||
22920 | 3' | -54.3 | NC_005137.2 | + | 103749 | 0.66 | 0.92355 |
Target: 5'- cACUGCGCCGAaucCGUGUuggacACCCAgCg -3' miRNA: 3'- -UGAUGCGGCUgu-GCGUAu----UGGGUgGa -5' |
|||||||
22920 | 3' | -54.3 | NC_005137.2 | + | 96312 | 0.67 | 0.8855 |
Target: 5'- --cACGCCGGCGCGCAagugUGGaCUGCCg -3' miRNA: 3'- ugaUGCGGCUGUGCGU----AUUgGGUGGa -5' |
|||||||
22920 | 3' | -54.3 | NC_005137.2 | + | 122498 | 0.67 | 0.903715 |
Target: 5'- aACUGCGUCGcCGCGCGUcuuuuucacgugcaAGCCUGCa- -3' miRNA: 3'- -UGAUGCGGCuGUGCGUA--------------UUGGGUGga -5' |
|||||||
22920 | 3' | -54.3 | NC_005137.2 | + | 123118 | 0.67 | 0.905629 |
Target: 5'- aGCUGCGCCGguguGCACGUuuu-CCUACg- -3' miRNA: 3'- -UGAUGCGGC----UGUGCGuauuGGGUGga -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home