miRNA: 3'- -GCuuCAC-UCACAAuaccUACACGCGC- -5'
miRNA: 3'- gcUUCACUCACAAuACCUA-CACg-CGC- -5'
miRNA: 3'- -GCUUCACUCACAAUACCUACACGCGC- -5'
Results 1 - 3 of 3 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 22920 | 5' | -49.1 | NC_005137.2 | + | 24484 | 0.69 | 0.983423 |
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Target: 5'- aCGgcGUGcAGUGUU----GUGUGCGCGg -3' miRNA: 3'- -GCuuCAC-UCACAAuaccUACACGCGC- -5' |
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| 22920 | 5' | -49.1 | NC_005137.2 | + | 14130 | 0.69 | 0.981332 |
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Target: 5'- -cGAGUGGGUGUU-UGGAUgGUGgaGCGg -3' miRNA: 3'- gcUUCACUCACAAuACCUA-CACg-CGC- -5' |
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| 22920 | 5' | -49.1 | NC_005137.2 | + | 16574 | 1.09 | 0.011357 |
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Target: 5'- gCGAAGUGAGUGUUAUGGAUGUGCGCGc -3' miRNA: 3'- -GCUUCACUCACAAUACCUACACGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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