miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22921 3' -53 NC_005137.2 + 48773 0.66 0.954401
Target:  5'- -aUCGuUGGAcGCGGCGCCGcacagcgugugcGGCAc- -3'
miRNA:   3'- gaAGUuGCCUuUGCCGCGGU------------CCGUuu -5'
22921 3' -53 NC_005137.2 + 310 0.66 0.954401
Target:  5'- --cCAGCGGAGAgCGuguuGCGCCAGGa--- -3'
miRNA:   3'- gaaGUUGCCUUU-GC----CGCGGUCCguuu -5'
22921 3' -53 NC_005137.2 + 99523 0.66 0.95018
Target:  5'- --aCAACGGGuuuGCgGGCGCCGuGCAu- -3'
miRNA:   3'- gaaGUUGCCUu--UG-CCGCGGUcCGUuu -5'
22921 3' -53 NC_005137.2 + 32199 0.66 0.945706
Target:  5'- -gUCGGCGcacGGCGGCGUuuGGCAGAc -3'
miRNA:   3'- gaAGUUGCcu-UUGCCGCGguCCGUUU- -5'
22921 3' -53 NC_005137.2 + 55578 0.66 0.940976
Target:  5'- ---uGGCGGAcgcgGGCGGCGCCGuGCGc- -3'
miRNA:   3'- gaagUUGCCU----UUGCCGCGGUcCGUuu -5'
22921 3' -53 NC_005137.2 + 19706 0.66 0.940976
Target:  5'- uUUCAgACGGGu-UGGCGgCGGGCAc- -3'
miRNA:   3'- gAAGU-UGCCUuuGCCGCgGUCCGUuu -5'
22921 3' -53 NC_005137.2 + 24398 0.67 0.913423
Target:  5'- -----uUGGAcGCGGCGUCAGGCc-- -3'
miRNA:   3'- gaaguuGCCUuUGCCGCGGUCCGuuu -5'
22921 3' -53 NC_005137.2 + 105497 0.68 0.900583
Target:  5'- --aCGACGGuuaucuagaauuAAGCGGCGCCAcacGGCu-- -3'
miRNA:   3'- gaaGUUGCC------------UUUGCCGCGGU---CCGuuu -5'
22921 3' -53 NC_005137.2 + 89105 0.68 0.886726
Target:  5'- -aUC-ACGGAGAuUGGCGC-GGGCGAAa -3'
miRNA:   3'- gaAGuUGCCUUU-GCCGCGgUCCGUUU- -5'
22921 3' -53 NC_005137.2 + 45676 0.68 0.886726
Target:  5'- --aCGugGGcgGCGGCGCCAacGCGGAu -3'
miRNA:   3'- gaaGUugCCuuUGCCGCGGUc-CGUUU- -5'
22921 3' -53 NC_005137.2 + 46640 0.68 0.879427
Target:  5'- --aUggUGGAcAGCGGCGCUaaGGGCAGc -3'
miRNA:   3'- gaaGuuGCCU-UUGCCGCGG--UCCGUUu -5'
22921 3' -53 NC_005137.2 + 88172 0.68 0.871887
Target:  5'- -cUCGGCGGugGCcGCGCC-GGCAAu -3'
miRNA:   3'- gaAGUUGCCuuUGcCGCGGuCCGUUu -5'
22921 3' -53 NC_005137.2 + 106207 0.68 0.871887
Target:  5'- --aCGugGGAcGCGGuCGCCaagaacGGGCAAAa -3'
miRNA:   3'- gaaGUugCCUuUGCC-GCGG------UCCGUUU- -5'
22921 3' -53 NC_005137.2 + 110719 0.69 0.861735
Target:  5'- --gCAACGGuguGCGcgcagagcgcuuguGCGCCGGGCGAu -3'
miRNA:   3'- gaaGUUGCCuu-UGC--------------CGCGGUCCGUUu -5'
22921 3' -53 NC_005137.2 + 3407 0.69 0.847884
Target:  5'- --gCGACGGuaccacguuuACGGCcaucGCCGGGCAAAa -3'
miRNA:   3'- gaaGUUGCCuu--------UGCCG----CGGUCCGUUU- -5'
22921 3' -53 NC_005137.2 + 108612 0.7 0.819267
Target:  5'- gCUUCAagcacaaccuggugGCGGuGACGGUGCCAcGCGAc -3'
miRNA:   3'- -GAAGU--------------UGCCuUUGCCGCGGUcCGUUu -5'
22921 3' -53 NC_005137.2 + 114271 0.7 0.81656
Target:  5'- uUUCAucCGGAAgcggugcagacgcacGCGGCGCUcGGCGAAc -3'
miRNA:   3'- gAAGUu-GCCUU---------------UGCCGCGGuCCGUUU- -5'
22921 3' -53 NC_005137.2 + 78811 0.7 0.784794
Target:  5'- ---gAGCGGGAGCGGCGUCGucGGUAu- -3'
miRNA:   3'- gaagUUGCCUUUGCCGCGGU--CCGUuu -5'
22921 3' -53 NC_005137.2 + 18409 0.7 0.775103
Target:  5'- -gUUAACGGAcGCGGCGCC--GCAGu -3'
miRNA:   3'- gaAGUUGCCUuUGCCGCGGucCGUUu -5'
22921 3' -53 NC_005137.2 + 125045 0.71 0.765272
Target:  5'- --gCAACGGAGccgggcggcGCGGCGCCGGaucugaacggcGCAAAg -3'
miRNA:   3'- gaaGUUGCCUU---------UGCCGCGGUC-----------CGUUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.