miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22921 5' -60.5 NC_005137.2 + 19547 1.06 0.001336
Target:  5'- gUUCUGUGCCCGCCGCCAACCCGUCUGa -3'
miRNA:   3'- -AAGACACGGGCGGCGGUUGGGCAGAC- -5'
22921 5' -60.5 NC_005137.2 + 110570 0.66 0.665985
Target:  5'- gUCgc-GCCCGuuGCCAGCUgcggaaacaccaCGUCUGu -3'
miRNA:   3'- aAGacaCGGGCggCGGUUGG------------GCAGAC- -5'
22921 5' -60.5 NC_005137.2 + 70586 0.67 0.605112
Target:  5'- --gUGUGCCCGaaCCGCCAACaCCuUCa- -3'
miRNA:   3'- aagACACGGGC--GGCGGUUG-GGcAGac -5'
22921 5' -60.5 NC_005137.2 + 15141 0.68 0.544926
Target:  5'- aUUUUGUGUCCGCUGCCAuacaGCUCcUCUu -3'
miRNA:   3'- -AAGACACGGGCGGCGGU----UGGGcAGAc -5'
22921 5' -60.5 NC_005137.2 + 122225 0.7 0.422966
Target:  5'- ---aGUGaCCCgGCCGCCGACCCGg--- -3'
miRNA:   3'- aagaCAC-GGG-CGGCGGUUGGGCagac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.