miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22922 3' -56.7 NC_005137.2 + 22768 0.66 0.855919
Target:  5'- --aGCCcaACCGGCCGCCCGaguuGCc -3'
miRNA:   3'- accCGGaaUGGCUGGUGGGCgaauCG- -5'
22922 3' -56.7 NC_005137.2 + 64866 0.66 0.855919
Target:  5'- uUGaGGCCUacggcGCCGACguCACgCGCU-AGCa -3'
miRNA:   3'- -AC-CCGGAa----UGGCUG--GUGgGCGAaUCG- -5'
22922 3' -56.7 NC_005137.2 + 98212 0.66 0.855919
Target:  5'- cUGcGGCCUUugCGcgaaaggcgcuGCUggACCCGCUcgcAGCg -3'
miRNA:   3'- -AC-CCGGAAugGC-----------UGG--UGGGCGAa--UCG- -5'
22922 3' -56.7 NC_005137.2 + 100285 0.66 0.848001
Target:  5'- gUGGGCgagcugUGCCG-CUucgaaacCCCGCUUGGUg -3'
miRNA:   3'- -ACCCGga----AUGGCuGGu------GGGCGAAUCG- -5'
22922 3' -56.7 NC_005137.2 + 110551 0.66 0.848001
Target:  5'- aGGuGCCc-GCCGAUgugCGCCCGCaccugcgucUUGGCg -3'
miRNA:   3'- aCC-CGGaaUGGCUG---GUGGGCG---------AAUCG- -5'
22922 3' -56.7 NC_005137.2 + 109754 0.66 0.839884
Target:  5'- cGGGUUUUACgacaGcGCCACCCGCcaaaccaAGCa -3'
miRNA:   3'- aCCCGGAAUGg---C-UGGUGGGCGaa-----UCG- -5'
22922 3' -56.7 NC_005137.2 + 33987 0.66 0.839884
Target:  5'- --uGCCUUuuuacACCGAUUGCaCGCUUAGCa -3'
miRNA:   3'- accCGGAA-----UGGCUGGUGgGCGAAUCG- -5'
22922 3' -56.7 NC_005137.2 + 103622 0.67 0.823085
Target:  5'- uUGGGCgaUAaaCGACCAaCCGCU-GGCg -3'
miRNA:   3'- -ACCCGgaAUg-GCUGGUgGGCGAaUCG- -5'
22922 3' -56.7 NC_005137.2 + 45181 0.67 0.814418
Target:  5'- cGGGCCcguaaagauaUUugUGGCCGCgCCgGCcgAGCa -3'
miRNA:   3'- aCCCGG----------AAugGCUGGUG-GG-CGaaUCG- -5'
22922 3' -56.7 NC_005137.2 + 129792 0.67 0.814418
Target:  5'- --cGCCUUcACCu-CCACCCGCUcaAGCg -3'
miRNA:   3'- accCGGAA-UGGcuGGUGGGCGAa-UCG- -5'
22922 3' -56.7 NC_005137.2 + 108723 0.67 0.805583
Target:  5'- cGGGCgCgccGCCGAUCACguacauuugCCGCUgcaucUGGCg -3'
miRNA:   3'- aCCCG-Gaa-UGGCUGGUG---------GGCGA-----AUCG- -5'
22922 3' -56.7 NC_005137.2 + 66336 0.67 0.796589
Target:  5'- aGGGUCUUGCuCGuuGCCGCCCcaGCcgauGCg -3'
miRNA:   3'- aCCCGGAAUG-GC--UGGUGGG--CGaau-CG- -5'
22922 3' -56.7 NC_005137.2 + 7105 0.67 0.778158
Target:  5'- -cGGUCUUGacaCGACCA-CCGCUUcGCa -3'
miRNA:   3'- acCCGGAAUg--GCUGGUgGGCGAAuCG- -5'
22922 3' -56.7 NC_005137.2 + 129757 0.68 0.76874
Target:  5'- aGcGCCUUcACCu-CCACCCGCUcaagcguuugUAGCg -3'
miRNA:   3'- aCcCGGAA-UGGcuGGUGGGCGA----------AUCG- -5'
22922 3' -56.7 NC_005137.2 + 93269 0.68 0.739782
Target:  5'- gGGGUCUgcgGCCaGCCGCCgGUUUuuGCu -3'
miRNA:   3'- aCCCGGAa--UGGcUGGUGGgCGAAu-CG- -5'
22922 3' -56.7 NC_005137.2 + 68588 0.69 0.669321
Target:  5'- aUGGGCUgcGCCGACUcguucaACCCGUgc-GCc -3'
miRNA:   3'- -ACCCGGaaUGGCUGG------UGGGCGaauCG- -5'
22922 3' -56.7 NC_005137.2 + 6433 0.7 0.638482
Target:  5'- cGGGCauuuguggaUGCUGGCUACCCGUUU-GCu -3'
miRNA:   3'- aCCCGga-------AUGGCUGGUGGGCGAAuCG- -5'
22922 3' -56.7 NC_005137.2 + 95996 0.71 0.576876
Target:  5'- cGGGCaacaauCCG-UCGCCCGCUgGGCa -3'
miRNA:   3'- aCCCGgaau--GGCuGGUGGGCGAaUCG- -5'
22922 3' -56.7 NC_005137.2 + 2502 0.72 0.497154
Target:  5'- aUGGuGCUggucAUCGACCACCCGCUagacguguuUGGUg -3'
miRNA:   3'- -ACC-CGGaa--UGGCUGGUGGGCGA---------AUCG- -5'
22922 3' -56.7 NC_005137.2 + 48668 0.73 0.477969
Target:  5'- uUGGuGCCUaACCcgGGCgACCCGCUUuGCg -3'
miRNA:   3'- -ACC-CGGAaUGG--CUGgUGGGCGAAuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.