Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22922 | 3' | -56.7 | NC_005137.2 | + | 22768 | 0.66 | 0.855919 |
Target: 5'- --aGCCcaACCGGCCGCCCGaguuGCc -3' miRNA: 3'- accCGGaaUGGCUGGUGGGCgaauCG- -5' |
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22922 | 3' | -56.7 | NC_005137.2 | + | 64866 | 0.66 | 0.855919 |
Target: 5'- uUGaGGCCUacggcGCCGACguCACgCGCU-AGCa -3' miRNA: 3'- -AC-CCGGAa----UGGCUG--GUGgGCGAaUCG- -5' |
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22922 | 3' | -56.7 | NC_005137.2 | + | 98212 | 0.66 | 0.855919 |
Target: 5'- cUGcGGCCUUugCGcgaaaggcgcuGCUggACCCGCUcgcAGCg -3' miRNA: 3'- -AC-CCGGAAugGC-----------UGG--UGGGCGAa--UCG- -5' |
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22922 | 3' | -56.7 | NC_005137.2 | + | 100285 | 0.66 | 0.848001 |
Target: 5'- gUGGGCgagcugUGCCG-CUucgaaacCCCGCUUGGUg -3' miRNA: 3'- -ACCCGga----AUGGCuGGu------GGGCGAAUCG- -5' |
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22922 | 3' | -56.7 | NC_005137.2 | + | 110551 | 0.66 | 0.848001 |
Target: 5'- aGGuGCCc-GCCGAUgugCGCCCGCaccugcgucUUGGCg -3' miRNA: 3'- aCC-CGGaaUGGCUG---GUGGGCG---------AAUCG- -5' |
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22922 | 3' | -56.7 | NC_005137.2 | + | 109754 | 0.66 | 0.839884 |
Target: 5'- cGGGUUUUACgacaGcGCCACCCGCcaaaccaAGCa -3' miRNA: 3'- aCCCGGAAUGg---C-UGGUGGGCGaa-----UCG- -5' |
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22922 | 3' | -56.7 | NC_005137.2 | + | 33987 | 0.66 | 0.839884 |
Target: 5'- --uGCCUUuuuacACCGAUUGCaCGCUUAGCa -3' miRNA: 3'- accCGGAA-----UGGCUGGUGgGCGAAUCG- -5' |
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22922 | 3' | -56.7 | NC_005137.2 | + | 103622 | 0.67 | 0.823085 |
Target: 5'- uUGGGCgaUAaaCGACCAaCCGCU-GGCg -3' miRNA: 3'- -ACCCGgaAUg-GCUGGUgGGCGAaUCG- -5' |
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22922 | 3' | -56.7 | NC_005137.2 | + | 45181 | 0.67 | 0.814418 |
Target: 5'- cGGGCCcguaaagauaUUugUGGCCGCgCCgGCcgAGCa -3' miRNA: 3'- aCCCGG----------AAugGCUGGUG-GG-CGaaUCG- -5' |
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22922 | 3' | -56.7 | NC_005137.2 | + | 129792 | 0.67 | 0.814418 |
Target: 5'- --cGCCUUcACCu-CCACCCGCUcaAGCg -3' miRNA: 3'- accCGGAA-UGGcuGGUGGGCGAa-UCG- -5' |
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22922 | 3' | -56.7 | NC_005137.2 | + | 108723 | 0.67 | 0.805583 |
Target: 5'- cGGGCgCgccGCCGAUCACguacauuugCCGCUgcaucUGGCg -3' miRNA: 3'- aCCCG-Gaa-UGGCUGGUG---------GGCGA-----AUCG- -5' |
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22922 | 3' | -56.7 | NC_005137.2 | + | 66336 | 0.67 | 0.796589 |
Target: 5'- aGGGUCUUGCuCGuuGCCGCCCcaGCcgauGCg -3' miRNA: 3'- aCCCGGAAUG-GC--UGGUGGG--CGaau-CG- -5' |
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22922 | 3' | -56.7 | NC_005137.2 | + | 7105 | 0.67 | 0.778158 |
Target: 5'- -cGGUCUUGacaCGACCA-CCGCUUcGCa -3' miRNA: 3'- acCCGGAAUg--GCUGGUgGGCGAAuCG- -5' |
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22922 | 3' | -56.7 | NC_005137.2 | + | 129757 | 0.68 | 0.76874 |
Target: 5'- aGcGCCUUcACCu-CCACCCGCUcaagcguuugUAGCg -3' miRNA: 3'- aCcCGGAA-UGGcuGGUGGGCGA----------AUCG- -5' |
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22922 | 3' | -56.7 | NC_005137.2 | + | 93269 | 0.68 | 0.739782 |
Target: 5'- gGGGUCUgcgGCCaGCCGCCgGUUUuuGCu -3' miRNA: 3'- aCCCGGAa--UGGcUGGUGGgCGAAu-CG- -5' |
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22922 | 3' | -56.7 | NC_005137.2 | + | 68588 | 0.69 | 0.669321 |
Target: 5'- aUGGGCUgcGCCGACUcguucaACCCGUgc-GCc -3' miRNA: 3'- -ACCCGGaaUGGCUGG------UGGGCGaauCG- -5' |
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22922 | 3' | -56.7 | NC_005137.2 | + | 6433 | 0.7 | 0.638482 |
Target: 5'- cGGGCauuuguggaUGCUGGCUACCCGUUU-GCu -3' miRNA: 3'- aCCCGga-------AUGGCUGGUGGGCGAAuCG- -5' |
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22922 | 3' | -56.7 | NC_005137.2 | + | 95996 | 0.71 | 0.576876 |
Target: 5'- cGGGCaacaauCCG-UCGCCCGCUgGGCa -3' miRNA: 3'- aCCCGgaau--GGCuGGUGGGCGAaUCG- -5' |
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22922 | 3' | -56.7 | NC_005137.2 | + | 2502 | 0.72 | 0.497154 |
Target: 5'- aUGGuGCUggucAUCGACCACCCGCUagacguguuUGGUg -3' miRNA: 3'- -ACC-CGGaa--UGGCUGGUGGGCGA---------AUCG- -5' |
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22922 | 3' | -56.7 | NC_005137.2 | + | 48668 | 0.73 | 0.477969 |
Target: 5'- uUGGuGCCUaACCcgGGCgACCCGCUUuGCg -3' miRNA: 3'- -ACC-CGGAaUGG--CUGgUGGGCGAAuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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