miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22923 3' -53 NC_005137.2 + 104856 0.66 0.968175
Target:  5'- -cGUAcaACG-GCGGCGCGCUG---GACu -3'
miRNA:   3'- gaCAU--UGCuUGCCGCGCGACuguCUG- -5'
22923 3' -53 NC_005137.2 + 39630 0.66 0.968175
Target:  5'- aUGUA-CGAuCGGCGUuccuguauuGCUGcCAGGCu -3'
miRNA:   3'- gACAUuGCUuGCCGCG---------CGACuGUCUG- -5'
22923 3' -53 NC_005137.2 + 116354 0.66 0.967859
Target:  5'- gUGUGuugcauuAUGAGCGGCaacaaucuaauuGCGCUGucuuCGGACc -3'
miRNA:   3'- gACAU-------UGCUUGCCG------------CGCGACu---GUCUG- -5'
22923 3' -53 NC_005137.2 + 42353 0.66 0.964913
Target:  5'- uUGUAGCGcGCGuCGCGUcccugucGGCGGACg -3'
miRNA:   3'- gACAUUGCuUGCcGCGCGa------CUGUCUG- -5'
22923 3' -53 NC_005137.2 + 48583 0.66 0.964913
Target:  5'- uUGUAAUGuAC-GUGCGUUGGCAGcGCa -3'
miRNA:   3'- gACAUUGCuUGcCGCGCGACUGUC-UG- -5'
22923 3' -53 NC_005137.2 + 84558 0.66 0.964913
Target:  5'- gCUGUGcaacACGu-CGGCGCGUucgGGCGGGu -3'
miRNA:   3'- -GACAU----UGCuuGCCGCGCGa--CUGUCUg -5'
22923 3' -53 NC_005137.2 + 100147 0.66 0.961423
Target:  5'- -gGUGGCGGuugguGCGuGCGCuGCUGGCGcACg -3'
miRNA:   3'- gaCAUUGCU-----UGC-CGCG-CGACUGUcUG- -5'
22923 3' -53 NC_005137.2 + 93719 0.66 0.961061
Target:  5'- uUGcGACG-ACGGCGCGUUgcguuuaaacuugGACAcGACg -3'
miRNA:   3'- gACaUUGCuUGCCGCGCGA-------------CUGU-CUG- -5'
22923 3' -53 NC_005137.2 + 38336 0.66 0.9577
Target:  5'- -cGUAggGCGuaAGCaGCGCGUUGACAGugGCg -3'
miRNA:   3'- gaCAU--UGC--UUGcCGCGCGACUGUC--UG- -5'
22923 3' -53 NC_005137.2 + 41968 0.66 0.949534
Target:  5'- ---aAACGcgUGGCGCGCcgUGACAG-Cg -3'
miRNA:   3'- gacaUUGCuuGCCGCGCG--ACUGUCuG- -5'
22923 3' -53 NC_005137.2 + 78906 0.67 0.940382
Target:  5'- uCUGguuACaAACGGCGCcCgGGCAGACc -3'
miRNA:   3'- -GACau-UGcUUGCCGCGcGaCUGUCUG- -5'
22923 3' -53 NC_005137.2 + 107967 0.67 0.940382
Target:  5'- -cGUAugcGCGAuCGGuCGCGUUGACGcGCg -3'
miRNA:   3'- gaCAU---UGCUuGCC-GCGCGACUGUcUG- -5'
22923 3' -53 NC_005137.2 + 79617 0.67 0.935428
Target:  5'- ---aGugGAGCGGcCGCGCUagcaACAGAUg -3'
miRNA:   3'- gacaUugCUUGCC-GCGCGAc---UGUCUG- -5'
22923 3' -53 NC_005137.2 + 107500 0.68 0.919044
Target:  5'- -aGUGGCGA--GGCGCGCacguuCAGGCg -3'
miRNA:   3'- gaCAUUGCUugCCGCGCGacu--GUCUG- -5'
22923 3' -53 NC_005137.2 + 2250 0.68 0.913074
Target:  5'- uUGgcGCGAuUGcGCGCGUUGAUuGACg -3'
miRNA:   3'- gACauUGCUuGC-CGCGCGACUGuCUG- -5'
22923 3' -53 NC_005137.2 + 45448 0.68 0.913074
Target:  5'- -aGUAGCGGGCGGCGCaGCacGCGcACg -3'
miRNA:   3'- gaCAUUGCUUGCCGCG-CGacUGUcUG- -5'
22923 3' -53 NC_005137.2 + 107134 0.68 0.893658
Target:  5'- ---cGACGAaggcgGCGGCGgGUUGGguGACg -3'
miRNA:   3'- gacaUUGCU-----UGCCGCgCGACUguCUG- -5'
22923 3' -53 NC_005137.2 + 5396 0.69 0.886695
Target:  5'- -cGUuuCGAGCGGCGCG-UGGCAauuuauuucGGCa -3'
miRNA:   3'- gaCAuuGCUUGCCGCGCgACUGU---------CUG- -5'
22923 3' -53 NC_005137.2 + 117562 0.69 0.856496
Target:  5'- gUGUAccggcaaaguGCGccgcCGGUGCgGCUGACGGGCg -3'
miRNA:   3'- gACAU----------UGCuu--GCCGCG-CGACUGUCUG- -5'
22923 3' -53 NC_005137.2 + 32198 0.69 0.856496
Target:  5'- -gGUcGGCGcACGGCgGCGuUUGGCAGACg -3'
miRNA:   3'- gaCA-UUGCuUGCCG-CGC-GACUGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.