miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22923 3' -53 NC_005137.2 + 2250 0.68 0.913074
Target:  5'- uUGgcGCGAuUGcGCGCGUUGAUuGACg -3'
miRNA:   3'- gACauUGCUuGC-CGCGCGACUGuCUG- -5'
22923 3' -53 NC_005137.2 + 5396 0.69 0.886695
Target:  5'- -cGUuuCGAGCGGCGCG-UGGCAauuuauuucGGCa -3'
miRNA:   3'- gaCAuuGCUUGCCGCGCgACUGU---------CUG- -5'
22923 3' -53 NC_005137.2 + 11417 0.73 0.685847
Target:  5'- -cGUAGCGGACGucaGCGCGCUGGaggGGAg -3'
miRNA:   3'- gaCAUUGCUUGC---CGCGCGACUg--UCUg -5'
22923 3' -53 NC_005137.2 + 12280 0.7 0.84839
Target:  5'- -gGUGGuuaaGGACGGCGCGUUGAUuaaaccauuuuuGGGCa -3'
miRNA:   3'- gaCAUUg---CUUGCCGCGCGACUG------------UCUG- -5'
22923 3' -53 NC_005137.2 + 24281 1.11 0.003305
Target:  5'- aCUGUAACGAACGGCGCGCUGACAGACg -3'
miRNA:   3'- -GACAUUGCUUGCCGCGCGACUGUCUG- -5'
22923 3' -53 NC_005137.2 + 28048 0.69 0.855695
Target:  5'- -cGUGGCGcGAC-GCGCGCUGGgaugcgcCAGACg -3'
miRNA:   3'- gaCAUUGC-UUGcCGCGCGACU-------GUCUG- -5'
22923 3' -53 NC_005137.2 + 32198 0.69 0.856496
Target:  5'- -gGUcGGCGcACGGCgGCGuUUGGCAGACg -3'
miRNA:   3'- gaCA-UUGCuUGCCG-CGC-GACUGUCUG- -5'
22923 3' -53 NC_005137.2 + 38336 0.66 0.9577
Target:  5'- -cGUAggGCGuaAGCaGCGCGUUGACAGugGCg -3'
miRNA:   3'- gaCAU--UGC--UUGcCGCGCGACUGUC--UG- -5'
22923 3' -53 NC_005137.2 + 39630 0.66 0.968175
Target:  5'- aUGUA-CGAuCGGCGUuccuguauuGCUGcCAGGCu -3'
miRNA:   3'- gACAUuGCUuGCCGCG---------CGACuGUCUG- -5'
22923 3' -53 NC_005137.2 + 41968 0.66 0.949534
Target:  5'- ---aAACGcgUGGCGCGCcgUGACAG-Cg -3'
miRNA:   3'- gacaUUGCuuGCCGCGCG--ACUGUCuG- -5'
22923 3' -53 NC_005137.2 + 42353 0.66 0.964913
Target:  5'- uUGUAGCGcGCGuCGCGUcccugucGGCGGACg -3'
miRNA:   3'- gACAUUGCuUGCcGCGCGa------CUGUCUG- -5'
22923 3' -53 NC_005137.2 + 45448 0.68 0.913074
Target:  5'- -aGUAGCGGGCGGCGCaGCacGCGcACg -3'
miRNA:   3'- gaCAUUGCUUGCCGCG-CGacUGUcUG- -5'
22923 3' -53 NC_005137.2 + 48583 0.66 0.964913
Target:  5'- uUGUAAUGuAC-GUGCGUUGGCAGcGCa -3'
miRNA:   3'- gACAUUGCuUGcCGCGCGACUGUC-UG- -5'
22923 3' -53 NC_005137.2 + 55897 0.76 0.518761
Target:  5'- aUGUGG-GAcACGGUGCGCUGGCAGGu -3'
miRNA:   3'- gACAUUgCU-UGCCGCGCGACUGUCUg -5'
22923 3' -53 NC_005137.2 + 78906 0.67 0.940382
Target:  5'- uCUGguuACaAACGGCGCcCgGGCAGACc -3'
miRNA:   3'- -GACau-UGcUUGCCGCGcGaCUGUCUG- -5'
22923 3' -53 NC_005137.2 + 79617 0.67 0.935428
Target:  5'- ---aGugGAGCGGcCGCGCUagcaACAGAUg -3'
miRNA:   3'- gacaUugCUUGCC-GCGCGAc---UGUCUG- -5'
22923 3' -53 NC_005137.2 + 84558 0.66 0.964913
Target:  5'- gCUGUGcaacACGu-CGGCGCGUucgGGCGGGu -3'
miRNA:   3'- -GACAU----UGCuuGCCGCGCGa--CUGUCUg -5'
22923 3' -53 NC_005137.2 + 87325 0.7 0.813955
Target:  5'- -cGUcGCGaAACGGCGCaGCUGGCcaaccgcauggcGGACa -3'
miRNA:   3'- gaCAuUGC-UUGCCGCG-CGACUG------------UCUG- -5'
22923 3' -53 NC_005137.2 + 93719 0.66 0.961061
Target:  5'- uUGcGACG-ACGGCGCGUUgcguuuaaacuugGACAcGACg -3'
miRNA:   3'- gACaUUGCuUGCCGCGCGA-------------CUGU-CUG- -5'
22923 3' -53 NC_005137.2 + 100147 0.66 0.961423
Target:  5'- -gGUGGCGGuugguGCGuGCGCuGCUGGCGcACg -3'
miRNA:   3'- gaCAUUGCU-----UGC-CGCG-CGACUGUcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.