miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22923 5' -57.4 NC_005137.2 + 1500 0.66 0.833249
Target:  5'- aCAuUCCGCCGCG-CgGCGCcgACGCGu- -3'
miRNA:   3'- -GUcAGGUGGCGCaGgCGCG--UGUGUug -5'
22923 5' -57.4 NC_005137.2 + 61637 0.66 0.833249
Target:  5'- ---aCCAcuguCCGCGUCCGCGgACAUu-- -3'
miRNA:   3'- gucaGGU----GGCGCAGGCGCgUGUGuug -5'
22923 5' -57.4 NC_005137.2 + 122447 0.66 0.833249
Target:  5'- gCGGUCUACUcCGUCgGCcgaGCGCACAu- -3'
miRNA:   3'- -GUCAGGUGGcGCAGgCG---CGUGUGUug -5'
22923 5' -57.4 NC_005137.2 + 42297 0.66 0.824835
Target:  5'- uGGuUCCACgGCGguuccaCGCGUcgaACGCAGCg -3'
miRNA:   3'- gUC-AGGUGgCGCag----GCGCG---UGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 130150 0.66 0.816246
Target:  5'- -cGUCaGCCGCG-CCGCG-AgACAACg -3'
miRNA:   3'- guCAGgUGGCGCaGGCGCgUgUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 123050 0.66 0.816246
Target:  5'- aCGGgCCGCCG-GUCgagguCGCGgCGCGCAGCc -3'
miRNA:   3'- -GUCaGGUGGCgCAG-----GCGC-GUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 41620 0.66 0.798573
Target:  5'- -cGUCCGCUGCGgacagCGCGUGCGCcAUg -3'
miRNA:   3'- guCAGGUGGCGCag---GCGCGUGUGuUG- -5'
22923 5' -57.4 NC_005137.2 + 95642 0.66 0.798573
Target:  5'- --uUCCGCgUGCG-CCGUGCGC-CGACg -3'
miRNA:   3'- gucAGGUG-GCGCaGGCGCGUGuGUUG- -5'
22923 5' -57.4 NC_005137.2 + 73074 0.66 0.798573
Target:  5'- aAGUCCGacacaaacUUGUgGUCCGUGUACACAAUc -3'
miRNA:   3'- gUCAGGU--------GGCG-CAGGCGCGUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 114096 0.67 0.789506
Target:  5'- uCAGUUCGCCgaGCG-CCGCGUGCGuCuGCa -3'
miRNA:   3'- -GUCAGGUGG--CGCaGGCGCGUGU-GuUG- -5'
22923 5' -57.4 NC_005137.2 + 116971 0.67 0.789506
Target:  5'- aAGcCUGCCGCGcCUGCcaaCACGCAGCc -3'
miRNA:   3'- gUCaGGUGGCGCaGGCGc--GUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 9359 0.67 0.780297
Target:  5'- -cGUgCCAUCGCGUuuGC-CAuCACAACu -3'
miRNA:   3'- guCA-GGUGGCGCAggCGcGU-GUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 36512 0.67 0.780297
Target:  5'- -cGUUCACgGUggGUUCGCGCacguGCACGACg -3'
miRNA:   3'- guCAGGUGgCG--CAGGCGCG----UGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 10719 0.67 0.770954
Target:  5'- -cGUgCACCGCa-UCGCGCACGCGu- -3'
miRNA:   3'- guCAgGUGGCGcaGGCGCGUGUGUug -5'
22923 5' -57.4 NC_005137.2 + 78587 0.67 0.770954
Target:  5'- aCAGguuugCCACCGUagaacGUCaaaCGCGCGCcgGCGACg -3'
miRNA:   3'- -GUCa----GGUGGCG-----CAG---GCGCGUG--UGUUG- -5'
22923 5' -57.4 NC_005137.2 + 93666 0.67 0.770954
Target:  5'- --cUCCGCCG-G-CCGCGUagauGCGCAACa -3'
miRNA:   3'- gucAGGUGGCgCaGGCGCG----UGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 7142 0.67 0.761487
Target:  5'- cCGG-CgACCGCucGUCCGUGUGCGcCAGCa -3'
miRNA:   3'- -GUCaGgUGGCG--CAGGCGCGUGU-GUUG- -5'
22923 5' -57.4 NC_005137.2 + 72350 0.67 0.751906
Target:  5'- gAGcUgCGCCGC-UCCGCGUGCACGc- -3'
miRNA:   3'- gUC-AgGUGGCGcAGGCGCGUGUGUug -5'
22923 5' -57.4 NC_005137.2 + 31236 0.67 0.751906
Target:  5'- cCAG-CUugaacaugGCCGCGUCgUGCGCGCuCAACu -3'
miRNA:   3'- -GUCaGG--------UGGCGCAG-GCGCGUGuGUUG- -5'
22923 5' -57.4 NC_005137.2 + 29837 0.68 0.732434
Target:  5'- --uUCCGCCGCGcuaaaaaagggUCGCGCGCuucuCAACg -3'
miRNA:   3'- gucAGGUGGCGCa----------GGCGCGUGu---GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.