Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22923 | 5' | -57.4 | NC_005137.2 | + | 79826 | 0.68 | 0.732434 |
Target: 5'- gGGUCguCCGcCG-CCGCGCcuGCACAAa -3' miRNA: 3'- gUCAGguGGC-GCaGGCGCG--UGUGUUg -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 116787 | 0.68 | 0.712614 |
Target: 5'- -uGUCCACgGCgGUgCGCucGCACACAAa -3' miRNA: 3'- guCAGGUGgCG-CAgGCG--CGUGUGUUg -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 112389 | 0.68 | 0.732434 |
Target: 5'- gCGGaaCGCCGCGUucaaucaucaCUGCGCGCACGu- -3' miRNA: 3'- -GUCagGUGGCGCA----------GGCGCGUGUGUug -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 29837 | 0.68 | 0.732434 |
Target: 5'- --uUCCGCCGCGcuaaaaaagggUCGCGCGCuucuCAACg -3' miRNA: 3'- gucAGGUGGCGCa----------GGCGCGUGu---GUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 99961 | 0.68 | 0.729481 |
Target: 5'- ---aCgGCCGCGgCCGCGCGCcucuucgugcgccaGCAGCg -3' miRNA: 3'- gucaGgUGGCGCaGGCGCGUG--------------UGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 42190 | 0.68 | 0.711615 |
Target: 5'- -cGUCCGCCGacagggaCGgcgaCGCGCGCuACAACg -3' miRNA: 3'- guCAGGUGGC-------GCag--GCGCGUG-UGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 18263 | 0.68 | 0.702595 |
Target: 5'- ----gCGCCGCGUCCGUuaACACGGa -3' miRNA: 3'- gucagGUGGCGCAGGCGcgUGUGUUg -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 1987 | 0.68 | 0.691507 |
Target: 5'- cCGGUCguuGCCGCGUgcacagcUCGUGCACGCuGCg -3' miRNA: 3'- -GUCAGg--UGGCGCA-------GGCGCGUGUGuUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 119683 | 0.68 | 0.692518 |
Target: 5'- aCAGg-CACgGCG--CGCGCACACAGCu -3' miRNA: 3'- -GUCagGUGgCGCagGCGCGUGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 129562 | 0.69 | 0.6313 |
Target: 5'- -uGUaCGCCGUGUCCGCGUAUAUg-- -3' miRNA: 3'- guCAgGUGGCGCAGGCGCGUGUGuug -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 107000 | 0.69 | 0.6313 |
Target: 5'- ---aUCugCGCGUaCUGCGUGCGCAACu -3' miRNA: 3'- gucaGGugGCGCA-GGCGCGUGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 90093 | 0.69 | 0.6313 |
Target: 5'- cCAGUUCugCgGCGUCCGgCGaGCACAAa -3' miRNA: 3'- -GUCAGGugG-CGCAGGC-GCgUGUGUUg -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 42412 | 0.69 | 0.64155 |
Target: 5'- gCGGUgccCCGCCgggacacgunauGUGUCCGcCGCGCGCAAUc -3' miRNA: 3'- -GUCA---GGUGG------------CGCAGGC-GCGUGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 104702 | 0.69 | 0.651792 |
Target: 5'- gAGUCCAgCGCG-CCGCcguuGUACGCGuACg -3' miRNA: 3'- gUCAGGUgGCGCaGGCG----CGUGUGU-UG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 18396 | 0.7 | 0.600586 |
Target: 5'- ----gCGCCGCaGUCgaacgaCGCGCACACAGCa -3' miRNA: 3'- gucagGUGGCG-CAG------GCGCGUGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 116271 | 0.7 | 0.61081 |
Target: 5'- gAGUggCCGCCuGUauuuuGUCCGCGCACACcaAACa -3' miRNA: 3'- gUCA--GGUGG-CG-----CAGGCGCGUGUG--UUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 89109 | 0.7 | 0.600586 |
Target: 5'- aCAGUCUGuCCGCuUCCGUGgGCACGuACa -3' miRNA: 3'- -GUCAGGU-GGCGcAGGCGCgUGUGU-UG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 80405 | 0.7 | 0.61081 |
Target: 5'- ---gCCACgGCGUUCGCGCcgucaucaaACGCAACc -3' miRNA: 3'- gucaGGUGgCGCAGGCGCG---------UGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 35260 | 0.7 | 0.621051 |
Target: 5'- -uGUUgACCGCGUuuGCGCcaaACAGCc -3' miRNA: 3'- guCAGgUGGCGCAggCGCGug-UGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 16749 | 0.7 | 0.621051 |
Target: 5'- gAG-CCGCCGCGcaUCaauGCGCGCACAu- -3' miRNA: 3'- gUCaGGUGGCGC--AGg--CGCGUGUGUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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