Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22923 | 5' | -57.4 | NC_005137.2 | + | 112389 | 0.68 | 0.732434 |
Target: 5'- gCGGaaCGCCGCGUucaaucaucaCUGCGCGCACGu- -3' miRNA: 3'- -GUCagGUGGCGCA----------GGCGCGUGUGUug -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 116787 | 0.68 | 0.712614 |
Target: 5'- -uGUCCACgGCgGUgCGCucGCACACAAa -3' miRNA: 3'- guCAGGUGgCG-CAgGCG--CGUGUGUUg -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 29837 | 0.68 | 0.732434 |
Target: 5'- --uUCCGCCGCGcuaaaaaagggUCGCGCGCuucuCAACg -3' miRNA: 3'- gucAGGUGGCGCa----------GGCGCGUGu---GUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 99961 | 0.68 | 0.729481 |
Target: 5'- ---aCgGCCGCGgCCGCGCGCcucuucgugcgccaGCAGCg -3' miRNA: 3'- gucaGgUGGCGCaGGCGCGUG--------------UGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 42190 | 0.68 | 0.711615 |
Target: 5'- -cGUCCGCCGacagggaCGgcgaCGCGCGCuACAACg -3' miRNA: 3'- guCAGGUGGC-------GCag--GCGCGUG-UGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 18263 | 0.68 | 0.702595 |
Target: 5'- ----gCGCCGCGUCCGUuaACACGGa -3' miRNA: 3'- gucagGUGGCGCAGGCGcgUGUGUUg -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 119683 | 0.68 | 0.692518 |
Target: 5'- aCAGg-CACgGCG--CGCGCACACAGCu -3' miRNA: 3'- -GUCagGUGgCGCagGCGCGUGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 107977 | 0.68 | 0.732434 |
Target: 5'- --aUCgGUCGCGUUgaCGCGCGCGCAGCu -3' miRNA: 3'- gucAGgUGGCGCAG--GCGCGUGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 1987 | 0.68 | 0.691507 |
Target: 5'- cCGGUCguuGCCGCGUgcacagcUCGUGCACGCuGCg -3' miRNA: 3'- -GUCAGg--UGGCGCA-------GGCGCGUGUGuUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 7142 | 0.67 | 0.761487 |
Target: 5'- cCGG-CgACCGCucGUCCGUGUGCGcCAGCa -3' miRNA: 3'- -GUCaGgUGGCG--CAGGCGCGUGU-GUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 9359 | 0.67 | 0.780297 |
Target: 5'- -cGUgCCAUCGCGUuuGC-CAuCACAACu -3' miRNA: 3'- guCA-GGUGGCGCAggCGcGU-GUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 116971 | 0.67 | 0.789506 |
Target: 5'- aAGcCUGCCGCGcCUGCcaaCACGCAGCc -3' miRNA: 3'- gUCaGGUGGCGCaGGCGc--GUGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 114096 | 0.67 | 0.789506 |
Target: 5'- uCAGUUCGCCgaGCG-CCGCGUGCGuCuGCa -3' miRNA: 3'- -GUCAGGUGG--CGCaGGCGCGUGU-GuUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 72350 | 0.67 | 0.751906 |
Target: 5'- gAGcUgCGCCGC-UCCGCGUGCACGc- -3' miRNA: 3'- gUC-AgGUGGCGcAGGCGCGUGUGUug -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 31236 | 0.67 | 0.751906 |
Target: 5'- cCAG-CUugaacaugGCCGCGUCgUGCGCGCuCAACu -3' miRNA: 3'- -GUCaGG--------UGGCGCAG-GCGCGUGuGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 10719 | 0.67 | 0.770954 |
Target: 5'- -cGUgCACCGCa-UCGCGCACGCGu- -3' miRNA: 3'- guCAgGUGGCGcaGGCGCGUGUGUug -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 78587 | 0.67 | 0.770954 |
Target: 5'- aCAGguuugCCACCGUagaacGUCaaaCGCGCGCcgGCGACg -3' miRNA: 3'- -GUCa----GGUGGCG-----CAG---GCGCGUG--UGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 93666 | 0.67 | 0.770954 |
Target: 5'- --cUCCGCCG-G-CCGCGUagauGCGCAACa -3' miRNA: 3'- gucAGGUGGCgCaGGCGCG----UGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 36512 | 0.67 | 0.780297 |
Target: 5'- -cGUUCACgGUggGUUCGCGCacguGCACGACg -3' miRNA: 3'- guCAGGUGgCG--CAGGCGCG----UGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 42297 | 0.66 | 0.824835 |
Target: 5'- uGGuUCCACgGCGguuccaCGCGUcgaACGCAGCg -3' miRNA: 3'- gUC-AGGUGgCGCag----GCGCG---UGUGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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