miRNA display CGI


Results 41 - 48 of 48 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22923 5' -57.4 NC_005137.2 + 73074 0.66 0.798573
Target:  5'- aAGUCCGacacaaacUUGUgGUCCGUGUACACAAUc -3'
miRNA:   3'- gUCAGGU--------GGCG-CAGGCGCGUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 123050 0.66 0.816246
Target:  5'- aCGGgCCGCCG-GUCgagguCGCGgCGCGCAGCc -3'
miRNA:   3'- -GUCaGGUGGCgCAG-----GCGC-GUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 122447 0.66 0.833249
Target:  5'- gCGGUCUACUcCGUCgGCcgaGCGCACAu- -3'
miRNA:   3'- -GUCAGGUGGcGCAGgCG---CGUGUGUug -5'
22923 5' -57.4 NC_005137.2 + 1500 0.66 0.833249
Target:  5'- aCAuUCCGCCGCG-CgGCGCcgACGCGu- -3'
miRNA:   3'- -GUcAGGUGGCGCaGgCGCG--UGUGUug -5'
22923 5' -57.4 NC_005137.2 + 61637 0.66 0.833249
Target:  5'- ---aCCAcuguCCGCGUCCGCGgACAUu-- -3'
miRNA:   3'- gucaGGU----GGCGCAGGCGCgUGUGuug -5'
22923 5' -57.4 NC_005137.2 + 42297 0.66 0.824835
Target:  5'- uGGuUCCACgGCGguuccaCGCGUcgaACGCAGCg -3'
miRNA:   3'- gUC-AGGUGgCGCag----GCGCG---UGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 130150 0.66 0.816246
Target:  5'- -cGUCaGCCGCG-CCGCG-AgACAACg -3'
miRNA:   3'- guCAGgUGGCGCaGGCGCgUgUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 41620 0.66 0.798573
Target:  5'- -cGUCCGCUGCGgacagCGCGUGCGCcAUg -3'
miRNA:   3'- guCAGGUGGCGCag---GCGCGUGUGuUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.