miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22923 5' -57.4 NC_005137.2 + 24316 1.09 0.001642
Target:  5'- gCAGUCCACCGCGUCCGCGCACACAACa -3'
miRNA:   3'- -GUCAGGUGGCGCAGGCGCGUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 61392 0.77 0.247804
Target:  5'- --aUCCGCCGCGUuuGCGCGCAUuAUg -3'
miRNA:   3'- gucAGGUGGCGCAggCGCGUGUGuUG- -5'
22923 5' -57.4 NC_005137.2 + 63287 0.74 0.359003
Target:  5'- aCGGUCuCGCCGuCGcUCGCGgGCACAACg -3'
miRNA:   3'- -GUCAG-GUGGC-GCaGGCGCgUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 31812 0.73 0.438921
Target:  5'- -cGUCCGCuaugcacagcgugguCGCGUCCGCGCGCguGCAc- -3'
miRNA:   3'- guCAGGUG---------------GCGCAGGCGCGUG--UGUug -5'
22923 5' -57.4 NC_005137.2 + 61092 0.72 0.481555
Target:  5'- gAGUUugCGCCGCGUaaaaaaCGCGCAC-CAACg -3'
miRNA:   3'- gUCAG--GUGGCGCAg-----GCGCGUGuGUUG- -5'
22923 5' -57.4 NC_005137.2 + 61177 0.71 0.510414
Target:  5'- aCAGUuuGCCGuCGUCuCGC-CGCACAAUg -3'
miRNA:   3'- -GUCAggUGGC-GCAG-GCGcGUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 17642 0.71 0.549953
Target:  5'- cCAGacuUCCACgGCGUuuGCGgACGCAGu -3'
miRNA:   3'- -GUC---AGGUGgCGCAggCGCgUGUGUUg -5'
22923 5' -57.4 NC_005137.2 + 69422 0.7 0.600586
Target:  5'- ----gCGCCGCGaCCGCGCACGCc-- -3'
miRNA:   3'- gucagGUGGCGCaGGCGCGUGUGuug -5'
22923 5' -57.4 NC_005137.2 + 18396 0.7 0.600586
Target:  5'- ----gCGCCGCaGUCgaacgaCGCGCACACAGCa -3'
miRNA:   3'- gucagGUGGCG-CAG------GCGCGUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 89109 0.7 0.600586
Target:  5'- aCAGUCUGuCCGCuUCCGUGgGCACGuACa -3'
miRNA:   3'- -GUCAGGU-GGCGcAGGCGCgUGUGU-UG- -5'
22923 5' -57.4 NC_005137.2 + 116271 0.7 0.61081
Target:  5'- gAGUggCCGCCuGUauuuuGUCCGCGCACACcaAACa -3'
miRNA:   3'- gUCA--GGUGG-CG-----CAGGCGCGUGUG--UUG- -5'
22923 5' -57.4 NC_005137.2 + 80405 0.7 0.61081
Target:  5'- ---gCCACgGCGUUCGCGCcgucaucaaACGCAACc -3'
miRNA:   3'- gucaGGUGgCGCAGGCGCG---------UGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 16749 0.7 0.621051
Target:  5'- gAG-CCGCCGCGcaUCaauGCGCGCACAu- -3'
miRNA:   3'- gUCaGGUGGCGC--AGg--CGCGUGUGUug -5'
22923 5' -57.4 NC_005137.2 + 35260 0.7 0.621051
Target:  5'- -uGUUgACCGCGUuuGCGCcaaACAGCc -3'
miRNA:   3'- guCAGgUGGCGCAggCGCGug-UGUUG- -5'
22923 5' -57.4 NC_005137.2 + 90093 0.69 0.6313
Target:  5'- cCAGUUCugCgGCGUCCGgCGaGCACAAa -3'
miRNA:   3'- -GUCAGGugG-CGCAGGC-GCgUGUGUUg -5'
22923 5' -57.4 NC_005137.2 + 107000 0.69 0.6313
Target:  5'- ---aUCugCGCGUaCUGCGUGCGCAACu -3'
miRNA:   3'- gucaGGugGCGCA-GGCGCGUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 129562 0.69 0.6313
Target:  5'- -uGUaCGCCGUGUCCGCGUAUAUg-- -3'
miRNA:   3'- guCAgGUGGCGCAGGCGCGUGUGuug -5'
22923 5' -57.4 NC_005137.2 + 42412 0.69 0.64155
Target:  5'- gCGGUgccCCGCCgggacacgunauGUGUCCGcCGCGCGCAAUc -3'
miRNA:   3'- -GUCA---GGUGG------------CGCAGGC-GCGUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 104702 0.69 0.651792
Target:  5'- gAGUCCAgCGCG-CCGCcguuGUACGCGuACg -3'
miRNA:   3'- gUCAGGUgGCGCaGGCG----CGUGUGU-UG- -5'
22923 5' -57.4 NC_005137.2 + 1987 0.68 0.691507
Target:  5'- cCGGUCguuGCCGCGUgcacagcUCGUGCACGCuGCg -3'
miRNA:   3'- -GUCAGg--UGGCGCA-------GGCGCGUGUGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.