miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22923 5' -57.4 NC_005137.2 + 119683 0.68 0.692518
Target:  5'- aCAGg-CACgGCG--CGCGCACACAGCu -3'
miRNA:   3'- -GUCagGUGgCGCagGCGCGUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 18263 0.68 0.702595
Target:  5'- ----gCGCCGCGUCCGUuaACACGGa -3'
miRNA:   3'- gucagGUGGCGCAGGCGcgUGUGUUg -5'
22923 5' -57.4 NC_005137.2 + 42190 0.68 0.711615
Target:  5'- -cGUCCGCCGacagggaCGgcgaCGCGCGCuACAACg -3'
miRNA:   3'- guCAGGUGGC-------GCag--GCGCGUG-UGUUG- -5'
22923 5' -57.4 NC_005137.2 + 116787 0.68 0.712614
Target:  5'- -uGUCCACgGCgGUgCGCucGCACACAAa -3'
miRNA:   3'- guCAGGUGgCG-CAgGCG--CGUGUGUUg -5'
22923 5' -57.4 NC_005137.2 + 99961 0.68 0.729481
Target:  5'- ---aCgGCCGCGgCCGCGCGCcucuucgugcgccaGCAGCg -3'
miRNA:   3'- gucaGgUGGCGCaGGCGCGUG--------------UGUUG- -5'
22923 5' -57.4 NC_005137.2 + 107977 0.68 0.732434
Target:  5'- --aUCgGUCGCGUUgaCGCGCGCGCAGCu -3'
miRNA:   3'- gucAGgUGGCGCAG--GCGCGUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 79826 0.68 0.732434
Target:  5'- gGGUCguCCGcCG-CCGCGCcuGCACAAa -3'
miRNA:   3'- gUCAGguGGC-GCaGGCGCG--UGUGUUg -5'
22923 5' -57.4 NC_005137.2 + 29837 0.68 0.732434
Target:  5'- --uUCCGCCGCGcuaaaaaagggUCGCGCGCuucuCAACg -3'
miRNA:   3'- gucAGGUGGCGCa----------GGCGCGUGu---GUUG- -5'
22923 5' -57.4 NC_005137.2 + 112389 0.68 0.732434
Target:  5'- gCGGaaCGCCGCGUucaaucaucaCUGCGCGCACGu- -3'
miRNA:   3'- -GUCagGUGGCGCA----------GGCGCGUGUGUug -5'
22923 5' -57.4 NC_005137.2 + 72350 0.67 0.751906
Target:  5'- gAGcUgCGCCGC-UCCGCGUGCACGc- -3'
miRNA:   3'- gUC-AgGUGGCGcAGGCGCGUGUGUug -5'
22923 5' -57.4 NC_005137.2 + 31236 0.67 0.751906
Target:  5'- cCAG-CUugaacaugGCCGCGUCgUGCGCGCuCAACu -3'
miRNA:   3'- -GUCaGG--------UGGCGCAG-GCGCGUGuGUUG- -5'
22923 5' -57.4 NC_005137.2 + 7142 0.67 0.761487
Target:  5'- cCGG-CgACCGCucGUCCGUGUGCGcCAGCa -3'
miRNA:   3'- -GUCaGgUGGCG--CAGGCGCGUGU-GUUG- -5'
22923 5' -57.4 NC_005137.2 + 78587 0.67 0.770954
Target:  5'- aCAGguuugCCACCGUagaacGUCaaaCGCGCGCcgGCGACg -3'
miRNA:   3'- -GUCa----GGUGGCG-----CAG---GCGCGUG--UGUUG- -5'
22923 5' -57.4 NC_005137.2 + 10719 0.67 0.770954
Target:  5'- -cGUgCACCGCa-UCGCGCACGCGu- -3'
miRNA:   3'- guCAgGUGGCGcaGGCGCGUGUGUug -5'
22923 5' -57.4 NC_005137.2 + 93666 0.67 0.770954
Target:  5'- --cUCCGCCG-G-CCGCGUagauGCGCAACa -3'
miRNA:   3'- gucAGGUGGCgCaGGCGCG----UGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 9359 0.67 0.780297
Target:  5'- -cGUgCCAUCGCGUuuGC-CAuCACAACu -3'
miRNA:   3'- guCA-GGUGGCGCAggCGcGU-GUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 36512 0.67 0.780297
Target:  5'- -cGUUCACgGUggGUUCGCGCacguGCACGACg -3'
miRNA:   3'- guCAGGUGgCG--CAGGCGCG----UGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 116971 0.67 0.789506
Target:  5'- aAGcCUGCCGCGcCUGCcaaCACGCAGCc -3'
miRNA:   3'- gUCaGGUGGCGCaGGCGc--GUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 114096 0.67 0.789506
Target:  5'- uCAGUUCGCCgaGCG-CCGCGUGCGuCuGCa -3'
miRNA:   3'- -GUCAGGUGG--CGCaGGCGCGUGU-GuUG- -5'
22923 5' -57.4 NC_005137.2 + 73074 0.66 0.798573
Target:  5'- aAGUCCGacacaaacUUGUgGUCCGUGUACACAAUc -3'
miRNA:   3'- gUCAGGU--------GGCG-CAGGCGCGUGUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.