miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22923 5' -57.4 NC_005137.2 + 1500 0.66 0.833249
Target:  5'- aCAuUCCGCCGCG-CgGCGCcgACGCGu- -3'
miRNA:   3'- -GUcAGGUGGCGCaGgCGCG--UGUGUug -5'
22923 5' -57.4 NC_005137.2 + 1987 0.68 0.691507
Target:  5'- cCGGUCguuGCCGCGUgcacagcUCGUGCACGCuGCg -3'
miRNA:   3'- -GUCAGg--UGGCGCA-------GGCGCGUGUGuUG- -5'
22923 5' -57.4 NC_005137.2 + 7142 0.67 0.761487
Target:  5'- cCGG-CgACCGCucGUCCGUGUGCGcCAGCa -3'
miRNA:   3'- -GUCaGgUGGCG--CAGGCGCGUGU-GUUG- -5'
22923 5' -57.4 NC_005137.2 + 9359 0.67 0.780297
Target:  5'- -cGUgCCAUCGCGUuuGC-CAuCACAACu -3'
miRNA:   3'- guCA-GGUGGCGCAggCGcGU-GUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 10719 0.67 0.770954
Target:  5'- -cGUgCACCGCa-UCGCGCACGCGu- -3'
miRNA:   3'- guCAgGUGGCGcaGGCGCGUGUGUug -5'
22923 5' -57.4 NC_005137.2 + 16749 0.7 0.621051
Target:  5'- gAG-CCGCCGCGcaUCaauGCGCGCACAu- -3'
miRNA:   3'- gUCaGGUGGCGC--AGg--CGCGUGUGUug -5'
22923 5' -57.4 NC_005137.2 + 17642 0.71 0.549953
Target:  5'- cCAGacuUCCACgGCGUuuGCGgACGCAGu -3'
miRNA:   3'- -GUC---AGGUGgCGCAggCGCgUGUGUUg -5'
22923 5' -57.4 NC_005137.2 + 18263 0.68 0.702595
Target:  5'- ----gCGCCGCGUCCGUuaACACGGa -3'
miRNA:   3'- gucagGUGGCGCAGGCGcgUGUGUUg -5'
22923 5' -57.4 NC_005137.2 + 18396 0.7 0.600586
Target:  5'- ----gCGCCGCaGUCgaacgaCGCGCACACAGCa -3'
miRNA:   3'- gucagGUGGCG-CAG------GCGCGUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 24316 1.09 0.001642
Target:  5'- gCAGUCCACCGCGUCCGCGCACACAACa -3'
miRNA:   3'- -GUCAGGUGGCGCAGGCGCGUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 29837 0.68 0.732434
Target:  5'- --uUCCGCCGCGcuaaaaaagggUCGCGCGCuucuCAACg -3'
miRNA:   3'- gucAGGUGGCGCa----------GGCGCGUGu---GUUG- -5'
22923 5' -57.4 NC_005137.2 + 31236 0.67 0.751906
Target:  5'- cCAG-CUugaacaugGCCGCGUCgUGCGCGCuCAACu -3'
miRNA:   3'- -GUCaGG--------UGGCGCAG-GCGCGUGuGUUG- -5'
22923 5' -57.4 NC_005137.2 + 31812 0.73 0.438921
Target:  5'- -cGUCCGCuaugcacagcgugguCGCGUCCGCGCGCguGCAc- -3'
miRNA:   3'- guCAGGUG---------------GCGCAGGCGCGUG--UGUug -5'
22923 5' -57.4 NC_005137.2 + 35260 0.7 0.621051
Target:  5'- -uGUUgACCGCGUuuGCGCcaaACAGCc -3'
miRNA:   3'- guCAGgUGGCGCAggCGCGug-UGUUG- -5'
22923 5' -57.4 NC_005137.2 + 36512 0.67 0.780297
Target:  5'- -cGUUCACgGUggGUUCGCGCacguGCACGACg -3'
miRNA:   3'- guCAGGUGgCG--CAGGCGCG----UGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 41620 0.66 0.798573
Target:  5'- -cGUCCGCUGCGgacagCGCGUGCGCcAUg -3'
miRNA:   3'- guCAGGUGGCGCag---GCGCGUGUGuUG- -5'
22923 5' -57.4 NC_005137.2 + 42190 0.68 0.711615
Target:  5'- -cGUCCGCCGacagggaCGgcgaCGCGCGCuACAACg -3'
miRNA:   3'- guCAGGUGGC-------GCag--GCGCGUG-UGUUG- -5'
22923 5' -57.4 NC_005137.2 + 42297 0.66 0.824835
Target:  5'- uGGuUCCACgGCGguuccaCGCGUcgaACGCAGCg -3'
miRNA:   3'- gUC-AGGUGgCGCag----GCGCG---UGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 42412 0.69 0.64155
Target:  5'- gCGGUgccCCGCCgggacacgunauGUGUCCGcCGCGCGCAAUc -3'
miRNA:   3'- -GUCA---GGUGG------------CGCAGGC-GCGUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 61092 0.72 0.481555
Target:  5'- gAGUUugCGCCGCGUaaaaaaCGCGCAC-CAACg -3'
miRNA:   3'- gUCAG--GUGGCGCAg-----GCGCGUGuGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.