Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 22923 | 5' | -57.4 | NC_005137.2 | + | 116271 | 0.7 | 0.61081 |
|
Target: 5'- gAGUggCCGCCuGUauuuuGUCCGCGCACACcaAACa -3' miRNA: 3'- gUCA--GGUGG-CG-----CAGGCGCGUGUG--UUG- -5' |
|||||||
| 22923 | 5' | -57.4 | NC_005137.2 | + | 116787 | 0.68 | 0.712614 |
|
Target: 5'- -uGUCCACgGCgGUgCGCucGCACACAAa -3' miRNA: 3'- guCAGGUGgCG-CAgGCG--CGUGUGUUg -5' |
|||||||
| 22923 | 5' | -57.4 | NC_005137.2 | + | 116971 | 0.67 | 0.789506 |
|
Target: 5'- aAGcCUGCCGCGcCUGCcaaCACGCAGCc -3' miRNA: 3'- gUCaGGUGGCGCaGGCGc--GUGUGUUG- -5' |
|||||||
| 22923 | 5' | -57.4 | NC_005137.2 | + | 119683 | 0.68 | 0.692518 |
|
Target: 5'- aCAGg-CACgGCG--CGCGCACACAGCu -3' miRNA: 3'- -GUCagGUGgCGCagGCGCGUGUGUUG- -5' |
|||||||
| 22923 | 5' | -57.4 | NC_005137.2 | + | 122447 | 0.66 | 0.833249 |
|
Target: 5'- gCGGUCUACUcCGUCgGCcgaGCGCACAu- -3' miRNA: 3'- -GUCAGGUGGcGCAGgCG---CGUGUGUug -5' |
|||||||
| 22923 | 5' | -57.4 | NC_005137.2 | + | 123050 | 0.66 | 0.816246 |
|
Target: 5'- aCGGgCCGCCG-GUCgagguCGCGgCGCGCAGCc -3' miRNA: 3'- -GUCaGGUGGCgCAG-----GCGC-GUGUGUUG- -5' |
|||||||
| 22923 | 5' | -57.4 | NC_005137.2 | + | 129562 | 0.69 | 0.6313 |
|
Target: 5'- -uGUaCGCCGUGUCCGCGUAUAUg-- -3' miRNA: 3'- guCAgGUGGCGCAGGCGCGUGUGuug -5' |
|||||||
| 22923 | 5' | -57.4 | NC_005137.2 | + | 130150 | 0.66 | 0.816246 |
|
Target: 5'- -cGUCaGCCGCG-CCGCG-AgACAACg -3' miRNA: 3'- guCAGgUGGCGCaGGCGCgUgUGUUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home