Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22923 | 5' | -57.4 | NC_005137.2 | + | 78587 | 0.67 | 0.770954 |
Target: 5'- aCAGguuugCCACCGUagaacGUCaaaCGCGCGCcgGCGACg -3' miRNA: 3'- -GUCa----GGUGGCG-----CAG---GCGCGUG--UGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 73074 | 0.66 | 0.798573 |
Target: 5'- aAGUCCGacacaaacUUGUgGUCCGUGUACACAAUc -3' miRNA: 3'- gUCAGGU--------GGCG-CAGGCGCGUGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 72350 | 0.67 | 0.751906 |
Target: 5'- gAGcUgCGCCGC-UCCGCGUGCACGc- -3' miRNA: 3'- gUC-AgGUGGCGcAGGCGCGUGUGUug -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 69422 | 0.7 | 0.600586 |
Target: 5'- ----gCGCCGCGaCCGCGCACGCc-- -3' miRNA: 3'- gucagGUGGCGCaGGCGCGUGUGuug -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 63287 | 0.74 | 0.359003 |
Target: 5'- aCGGUCuCGCCGuCGcUCGCGgGCACAACg -3' miRNA: 3'- -GUCAG-GUGGC-GCaGGCGCgUGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 61637 | 0.66 | 0.833249 |
Target: 5'- ---aCCAcuguCCGCGUCCGCGgACAUu-- -3' miRNA: 3'- gucaGGU----GGCGCAGGCGCgUGUGuug -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 61392 | 0.77 | 0.247804 |
Target: 5'- --aUCCGCCGCGUuuGCGCGCAUuAUg -3' miRNA: 3'- gucAGGUGGCGCAggCGCGUGUGuUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 61177 | 0.71 | 0.510414 |
Target: 5'- aCAGUuuGCCGuCGUCuCGC-CGCACAAUg -3' miRNA: 3'- -GUCAggUGGC-GCAG-GCGcGUGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 61092 | 0.72 | 0.481555 |
Target: 5'- gAGUUugCGCCGCGUaaaaaaCGCGCAC-CAACg -3' miRNA: 3'- gUCAG--GUGGCGCAg-----GCGCGUGuGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 42412 | 0.69 | 0.64155 |
Target: 5'- gCGGUgccCCGCCgggacacgunauGUGUCCGcCGCGCGCAAUc -3' miRNA: 3'- -GUCA---GGUGG------------CGCAGGC-GCGUGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 42297 | 0.66 | 0.824835 |
Target: 5'- uGGuUCCACgGCGguuccaCGCGUcgaACGCAGCg -3' miRNA: 3'- gUC-AGGUGgCGCag----GCGCG---UGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 42190 | 0.68 | 0.711615 |
Target: 5'- -cGUCCGCCGacagggaCGgcgaCGCGCGCuACAACg -3' miRNA: 3'- guCAGGUGGC-------GCag--GCGCGUG-UGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 41620 | 0.66 | 0.798573 |
Target: 5'- -cGUCCGCUGCGgacagCGCGUGCGCcAUg -3' miRNA: 3'- guCAGGUGGCGCag---GCGCGUGUGuUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 36512 | 0.67 | 0.780297 |
Target: 5'- -cGUUCACgGUggGUUCGCGCacguGCACGACg -3' miRNA: 3'- guCAGGUGgCG--CAGGCGCG----UGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 35260 | 0.7 | 0.621051 |
Target: 5'- -uGUUgACCGCGUuuGCGCcaaACAGCc -3' miRNA: 3'- guCAGgUGGCGCAggCGCGug-UGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 31812 | 0.73 | 0.438921 |
Target: 5'- -cGUCCGCuaugcacagcgugguCGCGUCCGCGCGCguGCAc- -3' miRNA: 3'- guCAGGUG---------------GCGCAGGCGCGUG--UGUug -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 31236 | 0.67 | 0.751906 |
Target: 5'- cCAG-CUugaacaugGCCGCGUCgUGCGCGCuCAACu -3' miRNA: 3'- -GUCaGG--------UGGCGCAG-GCGCGUGuGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 29837 | 0.68 | 0.732434 |
Target: 5'- --uUCCGCCGCGcuaaaaaagggUCGCGCGCuucuCAACg -3' miRNA: 3'- gucAGGUGGCGCa----------GGCGCGUGu---GUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 24316 | 1.09 | 0.001642 |
Target: 5'- gCAGUCCACCGCGUCCGCGCACACAACa -3' miRNA: 3'- -GUCAGGUGGCGCAGGCGCGUGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 18396 | 0.7 | 0.600586 |
Target: 5'- ----gCGCCGCaGUCgaacgaCGCGCACACAGCa -3' miRNA: 3'- gucagGUGGCG-CAG------GCGCGUGUGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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