miRNA display CGI

Results 41 - 48 of 48 are showing below:
Show page: 1 2 3

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
22923	5'	-57.4	NC_005137.2	+	18263	0.68	0.702595
	Target:  5'- ----gCGCCGCGUCCGUuaACACGGa -3' miRNA:   3'- gucagGUGGCGCAGGCGcgUGUGUUg -5'
22923	5'	-57.4	NC_005137.2	+	17642	0.71	0.549953
	Target:  5'- cCAGacuUCCACgGCGUuuGCGgACGCAGu -3' miRNA:   3'- -GUC---AGGUGgCGCAggCGCgUGUGUUg -5'
22923	5'	-57.4	NC_005137.2	+	16749	0.7	0.621051
	Target:  5'- gAG-CCGCCGCGcaUCaauGCGCGCACAu- -3' miRNA:   3'- gUCaGGUGGCGC--AGg--CGCGUGUGUug -5'
22923	5'	-57.4	NC_005137.2	+	10719	0.67	0.770954
	Target:  5'- -cGUgCACCGCa-UCGCGCACGCGu- -3' miRNA:   3'- guCAgGUGGCGcaGGCGCGUGUGUug -5'
22923	5'	-57.4	NC_005137.2	+	9359	0.67	0.780297
	Target:  5'- -cGUgCCAUCGCGUuuGC-CAuCACAACu -3' miRNA:   3'- guCA-GGUGGCGCAggCGcGU-GUGUUG- -5'
22923	5'	-57.4	NC_005137.2	+	7142	0.67	0.761487
	Target:  5'- cCGG-CgACCGCucGUCCGUGUGCGcCAGCa -3' miRNA:   3'- -GUCaGgUGGCG--CAGGCGCGUGU-GUUG- -5'
22923	5'	-57.4	NC_005137.2	+	1987	0.68	0.691507
	Target:  5'- cCGGUCguuGCCGCGUgcacagcUCGUGCACGCuGCg -3' miRNA:   3'- -GUCAGg--UGGCGCA-------GGCGCGUGUGuUG- -5'
22923	5'	-57.4	NC_005137.2	+	1500	0.66	0.833249
	Target:  5'- aCAuUCCGCCGCG-CgGCGCcgACGCGu- -3' miRNA:   3'- -GUcAGGUGGCGCaGgCGCG--UGUGUug -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home