miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22923 5' -57.4 NC_005137.2 + 93666 0.67 0.770954
Target:  5'- --cUCCGCCG-G-CCGCGUagauGCGCAACa -3'
miRNA:   3'- gucAGGUGGCgCaGGCGCG----UGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 42190 0.68 0.711615
Target:  5'- -cGUCCGCCGacagggaCGgcgaCGCGCGCuACAACg -3'
miRNA:   3'- guCAGGUGGC-------GCag--GCGCGUG-UGUUG- -5'
22923 5' -57.4 NC_005137.2 + 99961 0.68 0.729481
Target:  5'- ---aCgGCCGCGgCCGCGCGCcucuucgugcgccaGCAGCg -3'
miRNA:   3'- gucaGgUGGCGCaGGCGCGUG--------------UGUUG- -5'
22923 5' -57.4 NC_005137.2 + 29837 0.68 0.732434
Target:  5'- --uUCCGCCGCGcuaaaaaagggUCGCGCGCuucuCAACg -3'
miRNA:   3'- gucAGGUGGCGCa----------GGCGCGUGu---GUUG- -5'
22923 5' -57.4 NC_005137.2 + 107977 0.68 0.732434
Target:  5'- --aUCgGUCGCGUUgaCGCGCGCGCAGCu -3'
miRNA:   3'- gucAGgUGGCGCAG--GCGCGUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 72350 0.67 0.751906
Target:  5'- gAGcUgCGCCGC-UCCGCGUGCACGc- -3'
miRNA:   3'- gUC-AgGUGGCGcAGGCGCGUGUGUug -5'
22923 5' -57.4 NC_005137.2 + 31236 0.67 0.751906
Target:  5'- cCAG-CUugaacaugGCCGCGUCgUGCGCGCuCAACu -3'
miRNA:   3'- -GUCaGG--------UGGCGCAG-GCGCGUGuGUUG- -5'
22923 5' -57.4 NC_005137.2 + 10719 0.67 0.770954
Target:  5'- -cGUgCACCGCa-UCGCGCACGCGu- -3'
miRNA:   3'- guCAgGUGGCGcaGGCGCGUGUGUug -5'
22923 5' -57.4 NC_005137.2 + 78587 0.67 0.770954
Target:  5'- aCAGguuugCCACCGUagaacGUCaaaCGCGCGCcgGCGACg -3'
miRNA:   3'- -GUCa----GGUGGCG-----CAG---GCGCGUG--UGUUG- -5'
22923 5' -57.4 NC_005137.2 + 18263 0.68 0.702595
Target:  5'- ----gCGCCGCGUCCGUuaACACGGa -3'
miRNA:   3'- gucagGUGGCGCAGGCGcgUGUGUUg -5'
22923 5' -57.4 NC_005137.2 + 119683 0.68 0.692518
Target:  5'- aCAGg-CACgGCG--CGCGCACACAGCu -3'
miRNA:   3'- -GUCagGUGgCGCagGCGCGUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 1987 0.68 0.691507
Target:  5'- cCGGUCguuGCCGCGUgcacagcUCGUGCACGCuGCg -3'
miRNA:   3'- -GUCAGg--UGGCGCA-------GGCGCGUGUGuUG- -5'
22923 5' -57.4 NC_005137.2 + 63287 0.74 0.359003
Target:  5'- aCGGUCuCGCCGuCGcUCGCGgGCACAACg -3'
miRNA:   3'- -GUCAG-GUGGC-GCaGGCGCgUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 61092 0.72 0.481555
Target:  5'- gAGUUugCGCCGCGUaaaaaaCGCGCAC-CAACg -3'
miRNA:   3'- gUCAG--GUGGCGCAg-----GCGCGUGuGUUG- -5'
22923 5' -57.4 NC_005137.2 + 61177 0.71 0.510414
Target:  5'- aCAGUuuGCCGuCGUCuCGC-CGCACAAUg -3'
miRNA:   3'- -GUCAggUGGC-GCAG-GCGcGUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 17642 0.71 0.549953
Target:  5'- cCAGacuUCCACgGCGUuuGCGgACGCAGu -3'
miRNA:   3'- -GUC---AGGUGgCGCAggCGCgUGUGUUg -5'
22923 5' -57.4 NC_005137.2 + 89109 0.7 0.600586
Target:  5'- aCAGUCUGuCCGCuUCCGUGgGCACGuACa -3'
miRNA:   3'- -GUCAGGU-GGCGcAGGCGCgUGUGU-UG- -5'
22923 5' -57.4 NC_005137.2 + 90093 0.69 0.6313
Target:  5'- cCAGUUCugCgGCGUCCGgCGaGCACAAa -3'
miRNA:   3'- -GUCAGGugG-CGCAGGC-GCgUGUGUUg -5'
22923 5' -57.4 NC_005137.2 + 42412 0.69 0.64155
Target:  5'- gCGGUgccCCGCCgggacacgunauGUGUCCGcCGCGCGCAAUc -3'
miRNA:   3'- -GUCA---GGUGG------------CGCAGGC-GCGUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 104702 0.69 0.651792
Target:  5'- gAGUCCAgCGCG-CCGCcguuGUACGCGuACg -3'
miRNA:   3'- gUCAGGUgGCGCaGGCG----CGUGUGU-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.