miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22923 5' -57.4 NC_005137.2 + 89109 0.7 0.600586
Target:  5'- aCAGUCUGuCCGCuUCCGUGgGCACGuACa -3'
miRNA:   3'- -GUCAGGU-GGCGcAGGCGCgUGUGU-UG- -5'
22923 5' -57.4 NC_005137.2 + 90093 0.69 0.6313
Target:  5'- cCAGUUCugCgGCGUCCGgCGaGCACAAa -3'
miRNA:   3'- -GUCAGGugG-CGCAGGC-GCgUGUGUUg -5'
22923 5' -57.4 NC_005137.2 + 42412 0.69 0.64155
Target:  5'- gCGGUgccCCGCCgggacacgunauGUGUCCGcCGCGCGCAAUc -3'
miRNA:   3'- -GUCA---GGUGG------------CGCAGGC-GCGUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 104702 0.69 0.651792
Target:  5'- gAGUCCAgCGCG-CCGCcguuGUACGCGuACg -3'
miRNA:   3'- gUCAGGUgGCGCaGGCG----CGUGUGU-UG- -5'
22923 5' -57.4 NC_005137.2 + 1987 0.68 0.691507
Target:  5'- cCGGUCguuGCCGCGUgcacagcUCGUGCACGCuGCg -3'
miRNA:   3'- -GUCAGg--UGGCGCA-------GGCGCGUGUGuUG- -5'
22923 5' -57.4 NC_005137.2 + 119683 0.68 0.692518
Target:  5'- aCAGg-CACgGCG--CGCGCACACAGCu -3'
miRNA:   3'- -GUCagGUGgCGCagGCGCGUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 18263 0.68 0.702595
Target:  5'- ----gCGCCGCGUCCGUuaACACGGa -3'
miRNA:   3'- gucagGUGGCGCAGGCGcgUGUGUUg -5'
22923 5' -57.4 NC_005137.2 + 42190 0.68 0.711615
Target:  5'- -cGUCCGCCGacagggaCGgcgaCGCGCGCuACAACg -3'
miRNA:   3'- guCAGGUGGC-------GCag--GCGCGUG-UGUUG- -5'
22923 5' -57.4 NC_005137.2 + 112389 0.68 0.732434
Target:  5'- gCGGaaCGCCGCGUucaaucaucaCUGCGCGCACGu- -3'
miRNA:   3'- -GUCagGUGGCGCA----------GGCGCGUGUGUug -5'
22923 5' -57.4 NC_005137.2 + 79826 0.68 0.732434
Target:  5'- gGGUCguCCGcCG-CCGCGCcuGCACAAa -3'
miRNA:   3'- gUCAGguGGC-GCaGGCGCG--UGUGUUg -5'
22923 5' -57.4 NC_005137.2 + 116787 0.68 0.712614
Target:  5'- -uGUCCACgGCgGUgCGCucGCACACAAa -3'
miRNA:   3'- guCAGGUGgCG-CAgGCG--CGUGUGUUg -5'
22923 5' -57.4 NC_005137.2 + 107000 0.69 0.6313
Target:  5'- ---aUCugCGCGUaCUGCGUGCGCAACu -3'
miRNA:   3'- gucaGGugGCGCA-GGCGCGUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 129562 0.69 0.6313
Target:  5'- -uGUaCGCCGUGUCCGCGUAUAUg-- -3'
miRNA:   3'- guCAgGUGGCGCAGGCGCGUGUGuug -5'
22923 5' -57.4 NC_005137.2 + 7142 0.67 0.761487
Target:  5'- cCGG-CgACCGCucGUCCGUGUGCGcCAGCa -3'
miRNA:   3'- -GUCaGgUGGCG--CAGGCGCGUGU-GUUG- -5'
22923 5' -57.4 NC_005137.2 + 9359 0.67 0.780297
Target:  5'- -cGUgCCAUCGCGUuuGC-CAuCACAACu -3'
miRNA:   3'- guCA-GGUGGCGCAggCGcGU-GUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 116971 0.67 0.789506
Target:  5'- aAGcCUGCCGCGcCUGCcaaCACGCAGCc -3'
miRNA:   3'- gUCaGGUGGCGCaGGCGc--GUGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 41620 0.66 0.798573
Target:  5'- -cGUCCGCUGCGgacagCGCGUGCGCcAUg -3'
miRNA:   3'- guCAGGUGGCGCag---GCGCGUGUGuUG- -5'
22923 5' -57.4 NC_005137.2 + 130150 0.66 0.816246
Target:  5'- -cGUCaGCCGCG-CCGCG-AgACAACg -3'
miRNA:   3'- guCAGgUGGCGCaGGCGCgUgUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 42297 0.66 0.824835
Target:  5'- uGGuUCCACgGCGguuccaCGCGUcgaACGCAGCg -3'
miRNA:   3'- gUC-AGGUGgCGCag----GCGCG---UGUGUUG- -5'
22923 5' -57.4 NC_005137.2 + 61392 0.77 0.247804
Target:  5'- --aUCCGCCGCGUuuGCGCGCAUuAUg -3'
miRNA:   3'- gucAGGUGGCGCAggCGCGUGUGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.