Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22923 | 5' | -57.4 | NC_005137.2 | + | 61637 | 0.66 | 0.833249 |
Target: 5'- ---aCCAcuguCCGCGUCCGCGgACAUu-- -3' miRNA: 3'- gucaGGU----GGCGCAGGCGCgUGUGuug -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 18396 | 0.7 | 0.600586 |
Target: 5'- ----gCGCCGCaGUCgaacgaCGCGCACACAGCa -3' miRNA: 3'- gucagGUGGCG-CAG------GCGCGUGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 69422 | 0.7 | 0.600586 |
Target: 5'- ----gCGCCGCGaCCGCGCACGCc-- -3' miRNA: 3'- gucagGUGGCGCaGGCGCGUGUGuug -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 61392 | 0.77 | 0.247804 |
Target: 5'- --aUCCGCCGCGUuuGCGCGCAUuAUg -3' miRNA: 3'- gucAGGUGGCGCAggCGCGUGUGuUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 116971 | 0.67 | 0.789506 |
Target: 5'- aAGcCUGCCGCGcCUGCcaaCACGCAGCc -3' miRNA: 3'- gUCaGGUGGCGCaGGCGc--GUGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 9359 | 0.67 | 0.780297 |
Target: 5'- -cGUgCCAUCGCGUuuGC-CAuCACAACu -3' miRNA: 3'- guCA-GGUGGCGCAggCGcGU-GUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 112389 | 0.68 | 0.732434 |
Target: 5'- gCGGaaCGCCGCGUucaaucaucaCUGCGCGCACGu- -3' miRNA: 3'- -GUCagGUGGCGCA----------GGCGCGUGUGUug -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 79826 | 0.68 | 0.732434 |
Target: 5'- gGGUCguCCGcCG-CCGCGCcuGCACAAa -3' miRNA: 3'- gUCAGguGGC-GCaGGCGCG--UGUGUUg -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 129562 | 0.69 | 0.6313 |
Target: 5'- -uGUaCGCCGUGUCCGCGUAUAUg-- -3' miRNA: 3'- guCAgGUGGCGCAGGCGCGUGUGuug -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 35260 | 0.7 | 0.621051 |
Target: 5'- -uGUUgACCGCGUuuGCGCcaaACAGCc -3' miRNA: 3'- guCAGgUGGCGCAggCGCGug-UGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 107000 | 0.69 | 0.6313 |
Target: 5'- ---aUCugCGCGUaCUGCGUGCGCAACu -3' miRNA: 3'- gucaGGugGCGCA-GGCGCGUGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 42297 | 0.66 | 0.824835 |
Target: 5'- uGGuUCCACgGCGguuccaCGCGUcgaACGCAGCg -3' miRNA: 3'- gUC-AGGUGgCGCag----GCGCG---UGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 80405 | 0.7 | 0.61081 |
Target: 5'- ---gCCACgGCGUUCGCGCcgucaucaaACGCAACc -3' miRNA: 3'- gucaGGUGgCGCAGGCGCG---------UGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 130150 | 0.66 | 0.816246 |
Target: 5'- -cGUCaGCCGCG-CCGCG-AgACAACg -3' miRNA: 3'- guCAGgUGGCGCaGGCGCgUgUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 116787 | 0.68 | 0.712614 |
Target: 5'- -uGUCCACgGCgGUgCGCucGCACACAAa -3' miRNA: 3'- guCAGGUGgCG-CAgGCG--CGUGUGUUg -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 116271 | 0.7 | 0.61081 |
Target: 5'- gAGUggCCGCCuGUauuuuGUCCGCGCACACcaAACa -3' miRNA: 3'- gUCA--GGUGG-CG-----CAGGCGCGUGUG--UUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 31812 | 0.73 | 0.438921 |
Target: 5'- -cGUCCGCuaugcacagcgugguCGCGUCCGCGCGCguGCAc- -3' miRNA: 3'- guCAGGUG---------------GCGCAGGCGCGUG--UGUug -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 41620 | 0.66 | 0.798573 |
Target: 5'- -cGUCCGCUGCGgacagCGCGUGCGCcAUg -3' miRNA: 3'- guCAGGUGGCGCag---GCGCGUGUGuUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 7142 | 0.67 | 0.761487 |
Target: 5'- cCGG-CgACCGCucGUCCGUGUGCGcCAGCa -3' miRNA: 3'- -GUCaGgUGGCG--CAGGCGCGUGU-GUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 16749 | 0.7 | 0.621051 |
Target: 5'- gAG-CCGCCGCGcaUCaauGCGCGCACAu- -3' miRNA: 3'- gUCaGGUGGCGC--AGg--CGCGUGUGUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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