Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22923 | 5' | -57.4 | NC_005137.2 | + | 36512 | 0.67 | 0.780297 |
Target: 5'- -cGUUCACgGUggGUUCGCGCacguGCACGACg -3' miRNA: 3'- guCAGGUGgCG--CAGGCGCG----UGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 93666 | 0.67 | 0.770954 |
Target: 5'- --cUCCGCCG-G-CCGCGUagauGCGCAACa -3' miRNA: 3'- gucAGGUGGCgCaGGCGCG----UGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 78587 | 0.67 | 0.770954 |
Target: 5'- aCAGguuugCCACCGUagaacGUCaaaCGCGCGCcgGCGACg -3' miRNA: 3'- -GUCa----GGUGGCG-----CAG---GCGCGUG--UGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 31236 | 0.67 | 0.751906 |
Target: 5'- cCAG-CUugaacaugGCCGCGUCgUGCGCGCuCAACu -3' miRNA: 3'- -GUCaGG--------UGGCGCAG-GCGCGUGuGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 72350 | 0.67 | 0.751906 |
Target: 5'- gAGcUgCGCCGC-UCCGCGUGCACGc- -3' miRNA: 3'- gUC-AgGUGGCGcAGGCGCGUGUGUug -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 107977 | 0.68 | 0.732434 |
Target: 5'- --aUCgGUCGCGUUgaCGCGCGCGCAGCu -3' miRNA: 3'- gucAGgUGGCGCAG--GCGCGUGUGUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 29837 | 0.68 | 0.732434 |
Target: 5'- --uUCCGCCGCGcuaaaaaagggUCGCGCGCuucuCAACg -3' miRNA: 3'- gucAGGUGGCGCa----------GGCGCGUGu---GUUG- -5' |
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22923 | 5' | -57.4 | NC_005137.2 | + | 24316 | 1.09 | 0.001642 |
Target: 5'- gCAGUCCACCGCGUCCGCGCACACAACa -3' miRNA: 3'- -GUCAGGUGGCGCAGGCGCGUGUGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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