miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22924 5' -55 NC_005137.2 + 63924 0.67 0.897899
Target:  5'- gGACGGuuCGCACGCG-GUgcGCGAAUGUc -3'
miRNA:   3'- gCUGCU--GCGUGCGUgCA--CGCUUGCAa -5'
22924 5' -55 NC_005137.2 + 4380 0.67 0.897242
Target:  5'- cCGAcCGACGCAauUGCACGUuuugaagcagcgcGCGGACa-- -3'
miRNA:   3'- -GCU-GCUGCGU--GCGUGCA-------------CGCUUGcaa -5'
22924 5' -55 NC_005137.2 + 106861 0.67 0.891225
Target:  5'- aCGGCGGCGUuuGCGgcUGCGGugGUg -3'
miRNA:   3'- -GCUGCUGCGugCGUgcACGCUugCAa -5'
22924 5' -55 NC_005137.2 + 100300 0.67 0.884318
Target:  5'- cCGGCG-CGCcCGUACGUggGCGAGCuGUg -3'
miRNA:   3'- -GCUGCuGCGuGCGUGCA--CGCUUG-CAa -5'
22924 5' -55 NC_005137.2 + 95250 0.67 0.877183
Target:  5'- uGACGAagacacgguagUGCAgaUGCACGaUGCGGACGg- -3'
miRNA:   3'- gCUGCU-----------GCGU--GCGUGC-ACGCUUGCaa -5'
22924 5' -55 NC_005137.2 + 64547 0.67 0.877183
Target:  5'- uGACcaACGUGCGCACGUuaaGCGAcACGUUu -3'
miRNA:   3'- gCUGc-UGCGUGCGUGCA---CGCU-UGCAA- -5'
22924 5' -55 NC_005137.2 + 63456 0.67 0.869824
Target:  5'- uGAgGGCGCGCGUuguGCccGCGAGCGa- -3'
miRNA:   3'- gCUgCUGCGUGCG---UGcaCGCUUGCaa -5'
22924 5' -55 NC_005137.2 + 93515 0.67 0.867574
Target:  5'- cCGACGGCGCAaaUGCACGcgucggccgaaaacUGCGu-CGUg -3'
miRNA:   3'- -GCUGCUGCGU--GCGUGC--------------ACGCuuGCAa -5'
22924 5' -55 NC_005137.2 + 13600 0.68 0.862247
Target:  5'- aCGACG-UGCACGUaaaaccguuggACGaagGCGGACGUg -3'
miRNA:   3'- -GCUGCuGCGUGCG-----------UGCa--CGCUUGCAa -5'
22924 5' -55 NC_005137.2 + 96424 0.68 0.862247
Target:  5'- gCGGCGACGCGCccgcCGCGuUGCGuuuGCGc- -3'
miRNA:   3'- -GCUGCUGCGUGc---GUGC-ACGCu--UGCaa -5'
22924 5' -55 NC_005137.2 + 110647 0.68 0.854457
Target:  5'- cCGACGGCGuUugGCuugugccCGUGaCGGGCGUg -3'
miRNA:   3'- -GCUGCUGC-GugCGu------GCAC-GCUUGCAa -5'
22924 5' -55 NC_005137.2 + 45454 0.68 0.854457
Target:  5'- gGGCGGCGCA-GCACGcGCacGCGUUu -3'
miRNA:   3'- gCUGCUGCGUgCGUGCaCGcuUGCAA- -5'
22924 5' -55 NC_005137.2 + 1654 0.68 0.854457
Target:  5'- gCGuCGGCGC-CGCGCG-GCgGAAUGUa -3'
miRNA:   3'- -GCuGCUGCGuGCGUGCaCG-CUUGCAa -5'
22924 5' -55 NC_005137.2 + 98519 0.68 0.853667
Target:  5'- gCGACGGCGCcaaaccgGCGCACaaGCGuGACGg- -3'
miRNA:   3'- -GCUGCUGCG-------UGCGUGcaCGC-UUGCaa -5'
22924 5' -55 NC_005137.2 + 27621 0.68 0.846462
Target:  5'- uGGCGGCGCACGuCGCGacgucaauUGCGcguACGa- -3'
miRNA:   3'- gCUGCUGCGUGC-GUGC--------ACGCu--UGCaa -5'
22924 5' -55 NC_005137.2 + 26825 0.68 0.821311
Target:  5'- -aACGuuCGCACGUGCGUGCGucguCGUg -3'
miRNA:   3'- gcUGCu-GCGUGCGUGCACGCuu--GCAa -5'
22924 5' -55 NC_005137.2 + 41965 0.68 0.821311
Target:  5'- -cGCGugGCGCGC-CGUGacagcgucaGAACGUUu -3'
miRNA:   3'- gcUGCugCGUGCGuGCACg--------CUUGCAA- -5'
22924 5' -55 NC_005137.2 + 31882 0.68 0.821311
Target:  5'- gCGGCuauACGCACGCgaaACGacGCGAACGUg -3'
miRNA:   3'- -GCUGc--UGCGUGCG---UGCa-CGCUUGCAa -5'
22924 5' -55 NC_005137.2 + 69269 0.68 0.821311
Target:  5'- gGACGGCGUGCGCG-GUcGCGGcGCGUUu -3'
miRNA:   3'- gCUGCUGCGUGCGUgCA-CGCU-UGCAA- -5'
22924 5' -55 NC_005137.2 + 115736 0.69 0.803651
Target:  5'- aGugGACGCcaaggugcaACGCaACGUGCGcGCGc- -3'
miRNA:   3'- gCugCUGCG---------UGCG-UGCACGCuUGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.