miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22925 5' -59.7 NC_005137.2 + 87323 0.66 0.719585
Target:  5'- cGCGUCGCGAaaCG-GCGCaGCUGGcCAAc -3'
miRNA:   3'- -UGCAGCGCU--GCaCGCGgCGGUCaGUU- -5'
22925 5' -59.7 NC_005137.2 + 97990 0.66 0.709719
Target:  5'- gGCG-CGCGGCGUggguGCGCcCGCCAaGUg-- -3'
miRNA:   3'- -UGCaGCGCUGCA----CGCG-GCGGU-CAguu -5'
22925 5' -59.7 NC_005137.2 + 31573 0.66 0.689801
Target:  5'- aGCGgCGuCGACGUGCaGCUGCCAcgGUUg- -3'
miRNA:   3'- -UGCaGC-GCUGCACG-CGGCGGU--CAGuu -5'
22925 5' -59.7 NC_005137.2 + 1762 0.66 0.679767
Target:  5'- aACGuUUGUuuaaaGGCGUGCGCCGaCgGGUCGGu -3'
miRNA:   3'- -UGC-AGCG-----CUGCACGCGGC-GgUCAGUU- -5'
22925 5' -59.7 NC_005137.2 + 10870 0.67 0.669695
Target:  5'- cGCGUgCGCGAUGcgGUGCaCGCCA-UCGAa -3'
miRNA:   3'- -UGCA-GCGCUGCa-CGCG-GCGGUcAGUU- -5'
22925 5' -59.7 NC_005137.2 + 25668 0.67 0.659592
Target:  5'- cGCGUUGCaacgaGCGUGaCGgCGCCAuGUCGAg -3'
miRNA:   3'- -UGCAGCGc----UGCAC-GCgGCGGU-CAGUU- -5'
22925 5' -59.7 NC_005137.2 + 95645 0.67 0.659592
Target:  5'- cGCGU-GCGcCGUGCGCCGaCGGgCAAg -3'
miRNA:   3'- -UGCAgCGCuGCACGCGGCgGUCaGUU- -5'
22925 5' -59.7 NC_005137.2 + 21226 0.67 0.629188
Target:  5'- uACGUgGgCGACGcUGCggGCCGCguGUCAc -3'
miRNA:   3'- -UGCAgC-GCUGC-ACG--CGGCGguCAGUu -5'
22925 5' -59.7 NC_005137.2 + 70690 0.67 0.619047
Target:  5'- aACGUU-CGGCGgugGCGCUGCCgAGUUAAc -3'
miRNA:   3'- -UGCAGcGCUGCa--CGCGGCGG-UCAGUU- -5'
22925 5' -59.7 NC_005137.2 + 39435 0.67 0.619047
Target:  5'- uGCG-CGCGACGUGUa-CGCCAG-CGAu -3'
miRNA:   3'- -UGCaGCGCUGCACGcgGCGGUCaGUU- -5'
22925 5' -59.7 NC_005137.2 + 95752 0.68 0.578653
Target:  5'- cACGUCGCGcACaGUGCGCgGgCGG-CAAa -3'
miRNA:   3'- -UGCAGCGC-UG-CACGCGgCgGUCaGUU- -5'
22925 5' -59.7 NC_005137.2 + 27884 0.69 0.538854
Target:  5'- gGCGaUCGCGugGcgGCGCCaCgGGUCAu -3'
miRNA:   3'- -UGC-AGCGCugCa-CGCGGcGgUCAGUu -5'
22925 5' -59.7 NC_005137.2 + 96686 0.69 0.519299
Target:  5'- aGCGuUUGCGuuaacGCGUcaauuugcGCGCCGCUAGUCAu -3'
miRNA:   3'- -UGC-AGCGC-----UGCA--------CGCGGCGGUCAGUu -5'
22925 5' -59.7 NC_005137.2 + 6570 0.69 0.500031
Target:  5'- uACGUUauuuuuaGACGUGCGUcauCGCCGGUCAGu -3'
miRNA:   3'- -UGCAGcg-----CUGCACGCG---GCGGUCAGUU- -5'
22925 5' -59.7 NC_005137.2 + 98524 0.7 0.490516
Target:  5'- cCGUCGCGACG-GCGCCaaaCCGGcgCAc -3'
miRNA:   3'- uGCAGCGCUGCaCGCGGc--GGUCa-GUu -5'
22925 5' -59.7 NC_005137.2 + 72798 0.7 0.481085
Target:  5'- cGCGUUgGCGGCGcGCGCUGCC-GUCu- -3'
miRNA:   3'- -UGCAG-CGCUGCaCGCGGCGGuCAGuu -5'
22925 5' -59.7 NC_005137.2 + 60471 0.7 0.471744
Target:  5'- uCGUC-CGGCGUGCaccGCUGUCGGUCGGu -3'
miRNA:   3'- uGCAGcGCUGCACG---CGGCGGUCAGUU- -5'
22925 5' -59.7 NC_005137.2 + 64704 0.71 0.426494
Target:  5'- gUGUCGCuuaACGUGCGCaCGUUGGUCAAc -3'
miRNA:   3'- uGCAGCGc--UGCACGCG-GCGGUCAGUU- -5'
22925 5' -59.7 NC_005137.2 + 115414 0.71 0.399767
Target:  5'- -gGUCGCGGCGccaGCGUCGCCAuguguucGUCGAc -3'
miRNA:   3'- ugCAGCGCUGCa--CGCGGCGGU-------CAGUU- -5'
22925 5' -59.7 NC_005137.2 + 5061 0.73 0.305545
Target:  5'- gACGUCGUG-CGUGCGCCGCgAcauugagacggcgcGUCGAc -3'
miRNA:   3'- -UGCAGCGCuGCACGCGGCGgU--------------CAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.