miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22926 3' -44.4 NC_005137.2 + 95569 0.66 0.999987
Target:  5'- gGGUCGCAAAcaacugcAGAGCAGcGCaaaucccgucucCGUUUCg -3'
miRNA:   3'- aUUAGCGUUUu------UUUCGUC-CG------------GCAAAG- -5'
22926 3' -44.4 NC_005137.2 + 78079 0.66 0.999987
Target:  5'- aAGUCGCGAuGAAGuGCAGGUgGg--- -3'
miRNA:   3'- aUUAGCGUUuUUUU-CGUCCGgCaaag -5'
22926 3' -44.4 NC_005137.2 + 77114 0.66 0.999987
Target:  5'- cGAUCGUucuuGAAAAGCgAGGUCGg--- -3'
miRNA:   3'- aUUAGCGuu--UUUUUCG-UCCGGCaaag -5'
22926 3' -44.4 NC_005137.2 + 125259 0.66 0.999982
Target:  5'- aGAUCGC------AGCGGGCUGUa-- -3'
miRNA:   3'- aUUAGCGuuuuuuUCGUCCGGCAaag -5'
22926 3' -44.4 NC_005137.2 + 7443 0.66 0.999982
Target:  5'- cGAUUGCAAucgcGAGGCAcGCUGUUUg -3'
miRNA:   3'- aUUAGCGUUuu--UUUCGUcCGGCAAAg -5'
22926 3' -44.4 NC_005137.2 + 50695 0.66 0.999975
Target:  5'- aAAUCGCGuu---GGCGGGCaCGUc-- -3'
miRNA:   3'- aUUAGCGUuuuuuUCGUCCG-GCAaag -5'
22926 3' -44.4 NC_005137.2 + 15640 0.67 0.999965
Target:  5'- cGGUCGCAuuaauGAGGCacAGGCCaacGUUUUa -3'
miRNA:   3'- aUUAGCGUuuu--UUUCG--UCCGG---CAAAG- -5'
22926 3' -44.4 NC_005137.2 + 5572 0.67 0.999935
Target:  5'- --cUCGCAAugGGAGacguguauGGCCGUUUUu -3'
miRNA:   3'- auuAGCGUUuuUUUCgu------CCGGCAAAG- -5'
22926 3' -44.4 NC_005137.2 + 82398 0.67 0.999913
Target:  5'- cAAUUGCcu-----GCGGGUCGUUUCu -3'
miRNA:   3'- aUUAGCGuuuuuuuCGUCCGGCAAAG- -5'
22926 3' -44.4 NC_005137.2 + 111030 0.68 0.999884
Target:  5'- ---aCGCAAAuuuuGGAGGCcguaaGGGCCGUUg- -3'
miRNA:   3'- auuaGCGUUU----UUUUCG-----UCCGGCAAag -5'
22926 3' -44.4 NC_005137.2 + 63572 0.68 0.999846
Target:  5'- cAAUCGUuuAGAAA--AGGUCGUUUCg -3'
miRNA:   3'- aUUAGCGuuUUUUUcgUCCGGCAAAG- -5'
22926 3' -44.4 NC_005137.2 + 35156 0.69 0.99957
Target:  5'- gAAUCgGCAu-----GCAGGCCGUUg- -3'
miRNA:   3'- aUUAG-CGUuuuuuuCGUCCGGCAAag -5'
22926 3' -44.4 NC_005137.2 + 34039 0.69 0.999503
Target:  5'- ---aUGCAAAAGAAGCuugacgcuguuuccGGCCGUgUCg -3'
miRNA:   3'- auuaGCGUUUUUUUCGu-------------CCGGCAaAG- -5'
22926 3' -44.4 NC_005137.2 + 123018 0.7 0.998682
Target:  5'- cGAUCGCGAAAcacaAGAGUAaGCCGUa-- -3'
miRNA:   3'- aUUAGCGUUUU----UUUCGUcCGGCAaag -5'
22926 3' -44.4 NC_005137.2 + 24513 0.7 0.997617
Target:  5'- gUAGUgGCAAAuuAAuuGguGGCCGUUUg -3'
miRNA:   3'- -AUUAgCGUUU--UUuuCguCCGGCAAAg -5'
22926 3' -44.4 NC_005137.2 + 29530 0.71 0.997131
Target:  5'- aAAUCGUGAAu--GGCAGGCCa---- -3'
miRNA:   3'- aUUAGCGUUUuuuUCGUCCGGcaaag -5'
22926 3' -44.4 NC_005137.2 + 112587 0.72 0.993317
Target:  5'- ----aGCGAAAAGAGCAGccGCCGUUc- -3'
miRNA:   3'- auuagCGUUUUUUUCGUC--CGGCAAag -5'
22926 3' -44.4 NC_005137.2 + 9468 0.74 0.979799
Target:  5'- gUAAUgGCGGAcAAGAGCGGGuuGUUUg -3'
miRNA:   3'- -AUUAgCGUUU-UUUUCGUCCggCAAAg -5'
22926 3' -44.4 NC_005137.2 + 28134 0.75 0.956564
Target:  5'- -cAUCGCG---GAAGCGGGCaUGUUUCa -3'
miRNA:   3'- auUAGCGUuuuUUUCGUCCG-GCAAAG- -5'
22926 3' -44.4 NC_005137.2 + 77467 0.76 0.947489
Target:  5'- ---cCGCGGAAGacGAGCcGGCCGUUUUg -3'
miRNA:   3'- auuaGCGUUUUU--UUCGuCCGGCAAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.