Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22927 | 3' | -55.5 | NC_005137.2 | + | 1212 | 0.68 | 0.800511 |
Target: 5'- uCGGCCAUGUUGUGCG-AGCGu-CGuACg -3' miRNA: 3'- -GCUGGUGCGACACGUaUCGCcuGC-UG- -5' |
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22927 | 3' | -55.5 | NC_005137.2 | + | 2150 | 0.69 | 0.733772 |
Target: 5'- gCGugCACgaGCUGUGCAc-GCGGucaACGACc -3' miRNA: 3'- -GCugGUG--CGACACGUauCGCC---UGCUG- -5' |
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22927 | 3' | -55.5 | NC_005137.2 | + | 3348 | 0.69 | 0.782086 |
Target: 5'- gGGCCGCGCgGUGCAauaccCGGAaGACg -3' miRNA: 3'- gCUGGUGCGaCACGUauc--GCCUgCUG- -5' |
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22927 | 3' | -55.5 | NC_005137.2 | + | 23038 | 0.74 | 0.469663 |
Target: 5'- aCGGCU-CGCUGgagGUguucaccGUGGCGGACGACa -3' miRNA: 3'- -GCUGGuGCGACa--CG-------UAUCGCCUGCUG- -5' |
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22927 | 3' | -55.5 | NC_005137.2 | + | 31151 | 0.68 | 0.818311 |
Target: 5'- cCGACCA-GC-GUGCGcGGUugGGACGACc -3' miRNA: 3'- -GCUGGUgCGaCACGUaUCG--CCUGCUG- -5' |
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22927 | 3' | -55.5 | NC_005137.2 | + | 31384 | 0.66 | 0.88125 |
Target: 5'- gCGGCCAUGUucaagcuggUGUGCGcgaccgcUGGUacaaGGGCGACg -3' miRNA: 3'- -GCUGGUGCG---------ACACGU-------AUCG----CCUGCUG- -5' |
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22927 | 3' | -55.5 | NC_005137.2 | + | 31658 | 1.1 | 0.002203 |
Target: 5'- gCGACCACGCUGUGCAUAGCGGACGACa -3' miRNA: 3'- -GCUGGUGCGACACGUAUCGCCUGCUG- -5' |
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22927 | 3' | -55.5 | NC_005137.2 | + | 34561 | 0.74 | 0.451833 |
Target: 5'- uCGGCUACGCUGUGCGUuacaacaauuCGGcCGACg -3' miRNA: 3'- -GCUGGUGCGACACGUAuc--------GCCuGCUG- -5' |
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22927 | 3' | -55.5 | NC_005137.2 | + | 35034 | 0.7 | 0.703621 |
Target: 5'- uCGACCACGUagaUGUGCGc-GCGuACGGCu -3' miRNA: 3'- -GCUGGUGCG---ACACGUauCGCcUGCUG- -5' |
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22927 | 3' | -55.5 | NC_005137.2 | + | 46218 | 0.79 | 0.250934 |
Target: 5'- gCGGCgCACGCUGUGC--AGCGG-CGGCa -3' miRNA: 3'- -GCUG-GUGCGACACGuaUCGCCuGCUG- -5' |
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22927 | 3' | -55.5 | NC_005137.2 | + | 47639 | 0.66 | 0.888955 |
Target: 5'- cCGACUugGCUGagauUGCAagggggcucaUGGCGGccaACGAg -3' miRNA: 3'- -GCUGGugCGAC----ACGU----------AUCGCC---UGCUg -5' |
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22927 | 3' | -55.5 | NC_005137.2 | + | 47729 | 0.67 | 0.874741 |
Target: 5'- uGACCGCGCUGUuuGCAgcaagGGCcccguuuucGGGCG-Cu -3' miRNA: 3'- gCUGGUGCGACA--CGUa----UCG---------CCUGCuG- -5' |
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22927 | 3' | -55.5 | NC_005137.2 | + | 56676 | 0.66 | 0.881962 |
Target: 5'- cCGACgGCGCUGUGgaCGUGacCGGACG-Cg -3' miRNA: 3'- -GCUGgUGCGACAC--GUAUc-GCCUGCuG- -5' |
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22927 | 3' | -55.5 | NC_005137.2 | + | 59047 | 0.68 | 0.809493 |
Target: 5'- aGAUUgugaGCGUUGUGCAaacguuuGUGGACGGCu -3' miRNA: 3'- gCUGG----UGCGACACGUau-----CGCCUGCUG- -5' |
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22927 | 3' | -55.5 | NC_005137.2 | + | 60628 | 0.68 | 0.818311 |
Target: 5'- cCGACCGacaGCgGUGCAcgcCGGACGAg -3' miRNA: 3'- -GCUGGUg--CGaCACGUaucGCCUGCUg -5' |
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22927 | 3' | -55.5 | NC_005137.2 | + | 61342 | 0.66 | 0.895716 |
Target: 5'- gCGugUACaUUGUGC--GGCGaGACGACg -3' miRNA: 3'- -GCugGUGcGACACGuaUCGC-CUGCUG- -5' |
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22927 | 3' | -55.5 | NC_005137.2 | + | 61352 | 0.69 | 0.763108 |
Target: 5'- uGGCaCGCGCUcUGCGUcaaaugGGCGGcCGGCg -3' miRNA: 3'- gCUG-GUGCGAcACGUA------UCGCCuGCUG- -5' |
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22927 | 3' | -55.5 | NC_005137.2 | + | 63453 | 0.69 | 0.763108 |
Target: 5'- gGGCgCGCGUUGUGCccgcgAGCG-ACGGCg -3' miRNA: 3'- gCUG-GUGCGACACGua---UCGCcUGCUG- -5' |
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22927 | 3' | -55.5 | NC_005137.2 | + | 63898 | 0.67 | 0.867298 |
Target: 5'- --cCCACGUUGUauuugcgauGCuUGGCGGACGGu -3' miRNA: 3'- gcuGGUGCGACA---------CGuAUCGCCUGCUg -5' |
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22927 | 3' | -55.5 | NC_005137.2 | + | 64798 | 0.68 | 0.791372 |
Target: 5'- -aGCCGCGCcaacaUGUGCAccgaauCGGGCGACg -3' miRNA: 3'- gcUGGUGCG-----ACACGUauc---GCCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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