miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22928 3' -57.5 NC_005137.2 + 59792 0.66 0.820116
Target:  5'- aCAgcgGCGuGCCGuUGCAaaaaGUGGCgcGCUUGa -3'
miRNA:   3'- -GUa--UGC-CGGC-ACGUg---CGCCGa-CGAAC- -5'
22928 3' -57.5 NC_005137.2 + 22448 0.66 0.820116
Target:  5'- -uUugGGCaaCGUGCGCuccguCGGCUGCa-- -3'
miRNA:   3'- guAugCCG--GCACGUGc----GCCGACGaac -5'
22928 3' -57.5 NC_005137.2 + 125295 0.66 0.814893
Target:  5'- --aGCGGCgGUGCAUugucaagacguucgaGCGGCgcggcccgccGCUUGa -3'
miRNA:   3'- guaUGCCGgCACGUG---------------CGCCGa---------CGAAC- -5'
22928 3' -57.5 NC_005137.2 + 28077 0.66 0.811377
Target:  5'- --gACGGCUGUacacGCAgCGCGGcCUGCc-- -3'
miRNA:   3'- guaUGCCGGCA----CGU-GCGCC-GACGaac -5'
22928 3' -57.5 NC_005137.2 + 70581 0.66 0.811377
Target:  5'- uCAUGCGuuCGUGCuGCGCGgGCgGCUUu -3'
miRNA:   3'- -GUAUGCcgGCACG-UGCGC-CGaCGAAc -5'
22928 3' -57.5 NC_005137.2 + 19989 0.66 0.811377
Target:  5'- --gGCGGCgGagGCuuuguguCGCGGCguUGCUUGg -3'
miRNA:   3'- guaUGCCGgCa-CGu------GCGCCG--ACGAAC- -5'
22928 3' -57.5 NC_005137.2 + 31634 0.66 0.793413
Target:  5'- --aACGGUCaGUGCACGCGcGCggacGCg-- -3'
miRNA:   3'- guaUGCCGG-CACGUGCGC-CGa---CGaac -5'
22928 3' -57.5 NC_005137.2 + 106862 0.66 0.793413
Target:  5'- --aACGGCgGcGUuuGCGGCUGCggUGg -3'
miRNA:   3'- guaUGCCGgCaCGugCGCCGACGa-AC- -5'
22928 3' -57.5 NC_005137.2 + 33766 0.66 0.793413
Target:  5'- --cAUGGCCauuGUGCGCgGCGGCguugUGCUg- -3'
miRNA:   3'- guaUGCCGG---CACGUG-CGCCG----ACGAac -5'
22928 3' -57.5 NC_005137.2 + 62292 0.66 0.793413
Target:  5'- --aACGGUCGcGCugGUGGgUGCa-- -3'
miRNA:   3'- guaUGCCGGCaCGugCGCCgACGaac -5'
22928 3' -57.5 NC_005137.2 + 100038 0.66 0.774858
Target:  5'- --cGCGGuCCGacgcgGCGCGCGGC-GCg-- -3'
miRNA:   3'- guaUGCC-GGCa----CGUGCGCCGaCGaac -5'
22928 3' -57.5 NC_005137.2 + 95371 0.67 0.755784
Target:  5'- aGUACGGgCGUGU----GGCUGCUUGc -3'
miRNA:   3'- gUAUGCCgGCACGugcgCCGACGAAC- -5'
22928 3' -57.5 NC_005137.2 + 111511 0.67 0.755784
Target:  5'- gCAUAaauucgaGGCgCGUGUACaGCGaGCUGCUg- -3'
miRNA:   3'- -GUAUg------CCG-GCACGUG-CGC-CGACGAac -5'
22928 3' -57.5 NC_005137.2 + 32195 0.67 0.746077
Target:  5'- --cGCGGUCGgcGCACgGCGGC-GUUUGg -3'
miRNA:   3'- guaUGCCGGCa-CGUG-CGCCGaCGAAC- -5'
22928 3' -57.5 NC_005137.2 + 112865 0.67 0.744123
Target:  5'- -cUGCGGCuCGguccaagugauaGCACGCGGgCUGCg-- -3'
miRNA:   3'- guAUGCCG-GCa-----------CGUGCGCC-GACGaac -5'
22928 3' -57.5 NC_005137.2 + 75246 0.67 0.726366
Target:  5'- --gAUGGCCGUGaC-CGCGGgC-GCUUGa -3'
miRNA:   3'- guaUGCCGGCAC-GuGCGCC-GaCGAAC- -5'
22928 3' -57.5 NC_005137.2 + 101156 0.68 0.71538
Target:  5'- uGUACGGCCGcgGUuggacagGCGUGGCagGCUa- -3'
miRNA:   3'- gUAUGCCGGCa-CG-------UGCGCCGa-CGAac -5'
22928 3' -57.5 NC_005137.2 + 75443 0.69 0.644965
Target:  5'- -uUGCGGCCaacuUGCACGUGGCcgugGCaUUGu -3'
miRNA:   3'- guAUGCCGGc---ACGUGCGCCGa---CG-AAC- -5'
22928 3' -57.5 NC_005137.2 + 112443 0.69 0.644965
Target:  5'- aGU-CGGCCGuUGgACGCGGCgGCa-- -3'
miRNA:   3'- gUAuGCCGGC-ACgUGCGCCGaCGaac -5'
22928 3' -57.5 NC_005137.2 + 117999 0.69 0.624336
Target:  5'- --cGCGuCCGUGCugGUGGUUGCc-- -3'
miRNA:   3'- guaUGCcGGCACGugCGCCGACGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.