miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22928 3' -57.5 NC_005137.2 + 48480 0.69 0.603732
Target:  5'- aCGUGCcgccaaGGCCGUGCGCGaccaGCUGCg-- -3'
miRNA:   3'- -GUAUG------CCGGCACGUGCgc--CGACGaac -5'
22928 3' -57.5 NC_005137.2 + 2145 0.7 0.593458
Target:  5'- --cACGaGCUGUGCACGCGGUcaacgaccggGUUUGa -3'
miRNA:   3'- guaUGC-CGGCACGUGCGCCGa---------CGAAC- -5'
22928 3' -57.5 NC_005137.2 + 100068 0.7 0.552718
Target:  5'- gCAUGCuuuguGCCGcgGCGCGCGGCacgUGCUUa -3'
miRNA:   3'- -GUAUGc----CGGCa-CGUGCGCCG---ACGAAc -5'
22928 3' -57.5 NC_005137.2 + 50622 0.72 0.464798
Target:  5'- uCAUACacGCCG-GCACGgGGCUGCa-- -3'
miRNA:   3'- -GUAUGc-CGGCaCGUGCgCCGACGaac -5'
22928 3' -57.5 NC_005137.2 + 110627 0.73 0.401722
Target:  5'- --gACGGCCGUGCAcaaacgcgcCGaCGGCguuugGCUUGu -3'
miRNA:   3'- guaUGCCGGCACGU---------GC-GCCGa----CGAAC- -5'
22928 3' -57.5 NC_005137.2 + 87086 0.73 0.384723
Target:  5'- gCAUGaacGCCGUGCACGCGGCcGUUa- -3'
miRNA:   3'- -GUAUgc-CGGCACGUGCGCCGaCGAac -5'
22928 3' -57.5 NC_005137.2 + 32553 1.07 0.002227
Target:  5'- gCAUACGGCCGUGCACGCGGCUGCUUGc -3'
miRNA:   3'- -GUAUGCCGGCACGUGCGCCGACGAAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.