Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22928 | 3' | -57.5 | NC_005137.2 | + | 48480 | 0.69 | 0.603732 |
Target: 5'- aCGUGCcgccaaGGCCGUGCGCGaccaGCUGCg-- -3' miRNA: 3'- -GUAUG------CCGGCACGUGCgc--CGACGaac -5' |
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22928 | 3' | -57.5 | NC_005137.2 | + | 2145 | 0.7 | 0.593458 |
Target: 5'- --cACGaGCUGUGCACGCGGUcaacgaccggGUUUGa -3' miRNA: 3'- guaUGC-CGGCACGUGCGCCGa---------CGAAC- -5' |
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22928 | 3' | -57.5 | NC_005137.2 | + | 100068 | 0.7 | 0.552718 |
Target: 5'- gCAUGCuuuguGCCGcgGCGCGCGGCacgUGCUUa -3' miRNA: 3'- -GUAUGc----CGGCa-CGUGCGCCG---ACGAAc -5' |
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22928 | 3' | -57.5 | NC_005137.2 | + | 50622 | 0.72 | 0.464798 |
Target: 5'- uCAUACacGCCG-GCACGgGGCUGCa-- -3' miRNA: 3'- -GUAUGc-CGGCaCGUGCgCCGACGaac -5' |
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22928 | 3' | -57.5 | NC_005137.2 | + | 110627 | 0.73 | 0.401722 |
Target: 5'- --gACGGCCGUGCAcaaacgcgcCGaCGGCguuugGCUUGu -3' miRNA: 3'- guaUGCCGGCACGU---------GC-GCCGa----CGAAC- -5' |
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22928 | 3' | -57.5 | NC_005137.2 | + | 87086 | 0.73 | 0.384723 |
Target: 5'- gCAUGaacGCCGUGCACGCGGCcGUUa- -3' miRNA: 3'- -GUAUgc-CGGCACGUGCGCCGaCGAac -5' |
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22928 | 3' | -57.5 | NC_005137.2 | + | 32553 | 1.07 | 0.002227 |
Target: 5'- gCAUACGGCCGUGCACGCGGCUGCUUGc -3' miRNA: 3'- -GUAUGCCGGCACGUGCGCCGACGAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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