miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22929 5' -45.4 NC_005137.2 + 101982 0.66 0.999922
Target:  5'- ----cGCuuACCGAGCAGCCAUc--- -3'
miRNA:   3'- acaaaCGucUGGUUCGUUGGUAuaaa -5'
22929 5' -45.4 NC_005137.2 + 26440 0.66 0.999922
Target:  5'- cGUUUGUu-ACCAAGCGAUCGUu--- -3'
miRNA:   3'- aCAAACGucUGGUUCGUUGGUAuaaa -5'
22929 5' -45.4 NC_005137.2 + 3135 0.66 0.999922
Target:  5'- --cUUGCGGAauaacuucuUCGAGCAACCAUu--- -3'
miRNA:   3'- acaAACGUCU---------GGUUCGUUGGUAuaaa -5'
22929 5' -45.4 NC_005137.2 + 25966 0.66 0.999907
Target:  5'- --aUUGCAGACCAcauuuguuuugauuuAGUGGCCAa---- -3'
miRNA:   3'- acaAACGUCUGGU---------------UCGUUGGUauaaa -5'
22929 5' -45.4 NC_005137.2 + 68085 0.66 0.999896
Target:  5'- ----gGCGGACCcGGCGACguaGUGUUUa -3'
miRNA:   3'- acaaaCGUCUGGuUCGUUGg--UAUAAA- -5'
22929 5' -45.4 NC_005137.2 + 47186 0.66 0.999862
Target:  5'- ----aGCGGugCAGGCGuCCAUGa-- -3'
miRNA:   3'- acaaaCGUCugGUUCGUuGGUAUaaa -5'
22929 5' -45.4 NC_005137.2 + 97406 0.66 0.999862
Target:  5'- aGUUUGCAGGuuGGGCAcguacACCGg---- -3'
miRNA:   3'- aCAAACGUCUggUUCGU-----UGGUauaaa -5'
22929 5' -45.4 NC_005137.2 + 56667 0.67 0.999696
Target:  5'- cGUUUGCGG-CCAAcGUAacGCCGUAc-- -3'
miRNA:   3'- aCAAACGUCuGGUU-CGU--UGGUAUaaa -5'
22929 5' -45.4 NC_005137.2 + 62447 0.68 0.999022
Target:  5'- cGUUUGCAcccACCAGcGCGACCGUu--- -3'
miRNA:   3'- aCAAACGUc--UGGUU-CGUUGGUAuaaa -5'
22929 5' -45.4 NC_005137.2 + 99655 0.69 0.997346
Target:  5'- --aUUGCAGGCUGAGCu-CCGUAa-- -3'
miRNA:   3'- acaAACGUCUGGUUCGuuGGUAUaaa -5'
22929 5' -45.4 NC_005137.2 + 16100 0.8 0.702619
Target:  5'- uUGUgUGCAGACUAGGC-ACCAUGUa- -3'
miRNA:   3'- -ACAaACGUCUGGUUCGuUGGUAUAaa -5'
22929 5' -45.4 NC_005137.2 + 33003 1.08 0.025237
Target:  5'- aUGUUUGCAGACCAAGCAACCAUAUUUg -3'
miRNA:   3'- -ACAAACGUCUGGUUCGUUGGUAUAAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.