Results 1 - 12 of 12 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22929 | 5' | -45.4 | NC_005137.2 | + | 26440 | 0.66 | 0.999922 |
Target: 5'- cGUUUGUu-ACCAAGCGAUCGUu--- -3' miRNA: 3'- aCAAACGucUGGUUCGUUGGUAuaaa -5' |
|||||||
22929 | 5' | -45.4 | NC_005137.2 | + | 101982 | 0.66 | 0.999922 |
Target: 5'- ----cGCuuACCGAGCAGCCAUc--- -3' miRNA: 3'- acaaaCGucUGGUUCGUUGGUAuaaa -5' |
|||||||
22929 | 5' | -45.4 | NC_005137.2 | + | 3135 | 0.66 | 0.999922 |
Target: 5'- --cUUGCGGAauaacuucuUCGAGCAACCAUu--- -3' miRNA: 3'- acaAACGUCU---------GGUUCGUUGGUAuaaa -5' |
|||||||
22929 | 5' | -45.4 | NC_005137.2 | + | 25966 | 0.66 | 0.999907 |
Target: 5'- --aUUGCAGACCAcauuuguuuugauuuAGUGGCCAa---- -3' miRNA: 3'- acaAACGUCUGGU---------------UCGUUGGUauaaa -5' |
|||||||
22929 | 5' | -45.4 | NC_005137.2 | + | 68085 | 0.66 | 0.999896 |
Target: 5'- ----gGCGGACCcGGCGACguaGUGUUUa -3' miRNA: 3'- acaaaCGUCUGGuUCGUUGg--UAUAAA- -5' |
|||||||
22929 | 5' | -45.4 | NC_005137.2 | + | 97406 | 0.66 | 0.999862 |
Target: 5'- aGUUUGCAGGuuGGGCAcguacACCGg---- -3' miRNA: 3'- aCAAACGUCUggUUCGU-----UGGUauaaa -5' |
|||||||
22929 | 5' | -45.4 | NC_005137.2 | + | 47186 | 0.66 | 0.999862 |
Target: 5'- ----aGCGGugCAGGCGuCCAUGa-- -3' miRNA: 3'- acaaaCGUCugGUUCGUuGGUAUaaa -5' |
|||||||
22929 | 5' | -45.4 | NC_005137.2 | + | 56667 | 0.67 | 0.999696 |
Target: 5'- cGUUUGCGG-CCAAcGUAacGCCGUAc-- -3' miRNA: 3'- aCAAACGUCuGGUU-CGU--UGGUAUaaa -5' |
|||||||
22929 | 5' | -45.4 | NC_005137.2 | + | 62447 | 0.68 | 0.999022 |
Target: 5'- cGUUUGCAcccACCAGcGCGACCGUu--- -3' miRNA: 3'- aCAAACGUc--UGGUU-CGUUGGUAuaaa -5' |
|||||||
22929 | 5' | -45.4 | NC_005137.2 | + | 99655 | 0.69 | 0.997346 |
Target: 5'- --aUUGCAGGCUGAGCu-CCGUAa-- -3' miRNA: 3'- acaAACGUCUGGUUCGuuGGUAUaaa -5' |
|||||||
22929 | 5' | -45.4 | NC_005137.2 | + | 16100 | 0.8 | 0.702619 |
Target: 5'- uUGUgUGCAGACUAGGC-ACCAUGUa- -3' miRNA: 3'- -ACAaACGUCUGGUUCGuUGGUAUAaa -5' |
|||||||
22929 | 5' | -45.4 | NC_005137.2 | + | 33003 | 1.08 | 0.025237 |
Target: 5'- aUGUUUGCAGACCAAGCAACCAUAUUUg -3' miRNA: 3'- -ACAAACGUCUGGUUCGUUGGUAUAAA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home