miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2293 5' -68 NC_001408.1 + 1002 0.72 0.006516
Target:  5'- cGGGuCUGGCCCcuGGGCCGGcCCUGa -3'
miRNA:   3'- uCCC-GGCCGGGucCCCGGUCuGGGCg -5'
2293 5' -68 NC_001408.1 + 1034 1.1 0.000002
Target:  5'- cAGGGCCGGCCCAGGGGCCAGACCCGCg -3'
miRNA:   3'- -UCCCGGCCGGGUCCCCGGUCUGGGCG- -5'
2293 5' -68 NC_001408.1 + 1605 0.67 0.022711
Target:  5'- -aGG-CGGUUgAGGGGUCAGAucuCCCGCc -3'
miRNA:   3'- ucCCgGCCGGgUCCCCGGUCU---GGGCG- -5'
2293 5' -68 NC_001408.1 + 2032 0.71 0.009608
Target:  5'- cAGGGCCaacGCCCAGGaaaaGGCCucucuucggggucguGGCCCGUc -3'
miRNA:   3'- -UCCCGGc--CGGGUCC----CCGGu--------------CUGGGCG- -5'
2293 5' -68 NC_001408.1 + 2242 0.66 0.024515
Target:  5'- gAGGaCUGGCCCAccgauuGGCCAGugauggaggccgcgaACCCGCa -3'
miRNA:   3'- -UCCcGGCCGGGUcc----CCGGUC---------------UGGGCG- -5'
2293 5' -68 NC_001408.1 + 2744 0.68 0.015784
Target:  5'- uGGGGCCGuCCaacagGGGGcGCCAGuucucuccgcgcuCCCGCg -3'
miRNA:   3'- -UCCCGGCcGGg----UCCC-CGGUCu------------GGGCG- -5'
2293 5' -68 NC_001408.1 + 4343 0.67 0.020574
Target:  5'- uGGaGGCCGGgguaaacCCUAGGGGUUugGGACCCc- -3'
miRNA:   3'- -UC-CCGGCC-------GGGUCCCCGG--UCUGGGcg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.